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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g01615 ATGAGCAAGGAGAGGTTGGCGGCTCTGGCTCAGCAGCTCCGGATTTACAAGGTACCGGTGGCGGCTGATGATGATGATGACGATGCAGTGGGTCAGCCCTCAGAAGGATTCAGACCTAAGAAAGCGACTGTTTTGATCTGCCTTTTCGAACAAAATAATAATGAGGGGATTCGCGTGATTCTTACCAAAAGATCTCCTCGCCTCTCTACACATTCAGGTGAAGTCGCTTTGCCTGGAGGGAAGGCCGAGGAAGATGACGTAGATGACGTTGACACAGCCACTAGGGAAGCACACGAAGAGATTGGTCTCCATCCTTCACTCGTAGATGTTGTGGCCTTTCTTCAGCCCTTCTTGTCTAAGCATCTTCTGCGGGTAATCCCTGTAATTGGAATACTTTCTGACAGAGATGCCTTCAATCCTACTCCTAATGCTGCTGAAGTAGATGACGTCTTTGATGCTCCTTTGGAAATGTTTCTAAAGGATGAAAACTGA 492 47.76 MSKERLAALAQQLRIYKVPVAADDDDDDAVGQPSEGFRPKKATVLICLFEQNNNEGIRVILTKRSPRLSTHSGEVALPGGKAEEDDVDDVDTATREAHEEIGLHPSLVDVVAFLQPFLSKHLLRVIPVIGILSDRDAFNPTPNAAEVDDVFDAPLEMFLKDEN 163
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g01615 163 FunFam Nudix hydrolase 11 22 163 - -
Hetu2g01615 163 CDD CoAse 40 163 IPR045121 GO:0010945(InterPro)
Hetu2g01615 163 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 23 163 - -
Hetu2g01615 163 Pfam NUDIX domain 41 123 IPR000086 -
Hetu2g01615 163 PANTHER NUDIX HYDROLASE 2 159 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
Hetu2g01615 163 SUPERFAMILY Nudix 37 159 IPR015797 -
Hetu2g01615 163 ProSiteProfiles Nudix hydrolase domain profile. 39 163 IPR000086 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g01615 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:96232590 Hetu32g01881 Hetu-Chr32:98569739 dispersed
Hetu Hetu-Chr2:96232590 Hetu3g01497 Hetu-Chr3:83445501 wgd
Hetu Hetu-Chr2:96232590 Hetu31g01885 Hetu-Chr31:99271093 wgd