AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu31g00534 | ATGATGCTTCGAGTTATAAACAAAACGTCTTTCACCGGCGTCATCAGCCGGCGACGGATAACCACCACCGTAATGAGTTTTGGCGACGGCAGCCACGGTGCACTCGGCTTACCTACAACCGTCACCGGAATCGGATCCCACGCATACGAACCAACTCCAATCACAACGCTCCCTCCCGACGTTTCCACTGTCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCTAACGGCCACCTCTGGTCATGGGGCCGTAACGTTGAACACCAATTGGGTCGTAACATTGATTCCCCTAGAGAAACATGGGTTGAACCGGAAAGAGTGAATGGGTTGAGTGGTGTTCGATCGGCGTTTGCGTCGGGTGTGGTGTCTGCGGCTGTTAGTGGCGATGGGTCATTGTGGATCTGGGGGAAATCGAAGCGTGGGCAGTTAGGGCTTGGATTTGGGATTACAGAGGCTGTTGTTCCCTCCAGGGTTAAAGTTCTTGATAAAGAAGAGATAATTAAGGTGTCATTTGGATGGGGGCATGCTCTTGCACTTACTAAAGATGGGAAGTTGTTTGGTTGGGGATACTCAGCAGATGGTAGATTAGGAAAGAGAACAATTATGGGCGTTTCACCACTTGATTCAAAGGCTAATTTGTCATCAAGTTTGAAGCTTGAAGATGCTGAGAAAGTTGTATTGGAAGCTATGAACAAGGAGAACGATATGCCCATAATCTGGGAGCCTTGTTTAATCGATGAACTTAAAGGTGTCGAAGTTGCTGATGTGTCATGTGGGCTCGATCACACCTTGGTTCTTCTACGTGATGGAACCTTACTCAGTGGTGGAAGCAATGCATATGGTCAACTGGGTAGGTCAACACAAGAAATGGAGTTTCTTCCGGTCGACATAAGCGTCTACCCTGTCTCCATTGCTTCCGGACTGGGCCATTCTTTAGCAATATGCCGAATCCCATCAGCAGATGGAGGTGGCGGCATTTCAGGCATCTATTCATGGGGTTGGGGTCAGAACTATCAGCTCGGGCGGGAGGGTCCCACAAACATCCCGTTGCCCGTGGATGGACTTTTAGGGGAAAAACCGTTGTCAGTTTCAGGCGGGCGTGTGCACTCTGTTGCTGTCATGACCAATGGAGAGCTTTTTTCATGGGGGTGTGGTAGAAACGGACGGCTCGGGTTGGGTAGTTCTGCAGATGAGCCTGAACCCATGTGGGTCGAGTTATCAGAAGGAGGTAAAGTTTTGCAAGCTGTCGCAGGGTTTGATCATACTCTAGTCCTAACTGGCAACTAA | 1290 | 49.92 | MMLRVINKTSFTGVISRRRITTTVMSFGDGSHGALGLPTTVTGIGSHAYEPTPITTLPPDVSTVAAGHYHSLAVTSNGHLWSWGRNVEHQLGRNIDSPRETWVEPERVNGLSGVRSAFASGVVSAAVSGDGSLWIWGKSKRGQLGLGFGITEAVVPSRVKVLDKEEIIKVSFGWGHALALTKDGKLFGWGYSADGRLGKRTIMGVSPLDSKANLSSSLKLEDAEKVVLEAMNKENDMPIIWEPCLIDELKGVEVADVSCGLDHTLVLLRDGTLLSGGSNAYGQLGRSTQEMEFLPVDISVYPVSIASGLGHSLAICRIPSADGGGGISGIYSWGWGQNYQLGREGPTNIPLPVDGLLGEKPLSVSGGRVHSVAVMTNGELFSWGCGRNGRLGLGSSADEPEPMWVELSEGGKVLQAVAGFDHTLVLTGN | 429 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu31g00534 | 429 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 257 | 267 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 184 | 270 | IPR000408 | - | |
| Hetu31g00534 | 429 | Gene3D | - | 5 | 227 | IPR009091 | - | |
| Hetu31g00534 | 429 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 22 | 427 | IPR051210 | - | |
| Hetu31g00534 | 429 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 61 | 90 | - | - | |
| Hetu31g00534 | 429 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 254 | 283 | - | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 271 | 318 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 328 | 377 | IPR000408 | - | |
| Hetu31g00534 | 429 | SUPERFAMILY | RCC1-BLIP-II | 23 | 427 | IPR009091 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 80 | 96 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 23 | 39 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 170 | 186 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 61 | 74 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 373 | 394 | IPR000408 | - | |
| Hetu31g00534 | 429 | PRINTS | Chromosome condensation regulator RCC1 signature | 186 | 200 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 131 | 183 | IPR000408 | - | |
| Hetu31g00534 | 429 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 377 | 426 | IPR000408 | - | |
| Hetu31g00534 | 429 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 330 | 374 | IPR000408 | - | |
| Hetu31g00534 | 429 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 130 | 180 | IPR000408 | - | |
| Hetu31g00534 | 429 | Gene3D | - | 230 | 429 | IPR009091 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 378 | 429 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 64 | 74 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 78 | 130 | IPR000408 | - | |
| Hetu31g00534 | 429 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 22 | 77 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu31g00534 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 299124 | Hetu31g00534 | Hetu32g00597 | |
| 299954 | Hetu31g00534 | Hetu33g00687 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr31:19826127 | Hetu29g01823 | Hetu-Chr29:116679054 | dispersed | |
| Hetu | Hetu-Chr31:19826127 | Hetu32g00597 | Hetu-Chr32:24171922 | wgd | |
| Hetu | Hetu-Chr31:19826127 | Hetu33g00687 | Hetu-Chr33:24026222 | wgd |