AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g00720 ATGAGAGGATTAATGGGAAAATACCCATCAAGTGATGGCAATGGTGAAGTTGGTGGTGCAAATGGGATCATAAAAACCAACAGAAAATGCAGAGATGTTGTCTTTCTTGTTTTTTTCATTGCTTTTTGGATCGCCATGATTGTTAACTCCAGTTTTGGCTTCAATCAAGGAAACCCATTAAGGCTAAATTTCGGGTTGGATTACAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTCAACCTCCATGAGTTGGAACTCAAATATTACGTTAACCCGAATCAAGTTTACCAAAGCGGATTAAAAAACAGCGGAGCAAAACTCTCTAACGCGCGAACAATATGTTTATTGGATTGCCCAACTCCGTCAGAAGATTCATTGAACTGGGTTTGCGATTACCCCGAAGGAGATATCCGTATTTCATTAGACGATTGGATCGATATGAATTACGATTATTACGCTGACCTAACTCCAGAACTAAGAAACTCTTCTCTTCAGCTTCAAGGTCCTTGTTACCCCGTTATTTTTCCAAGCGTAAACGTTTATTGGACTTGTCAATTTGTTGATCGACCGTCAAACGTGTCGTTAACGCATTGGAAACAATTGAATGGTCTTACCATTGATGATGATATGGTCATAGATAAATCTATTCATAACTCCATTAATCAACGGTCCTCAGTATTGAAGAGATATGTAGCTGATGTTGGAAAATCATGGCCTGTTTTGATTGTGTGCGGAGGACTCTTGCCTCTAGGTTTATCGTTGCTATGGCTTTTAATGATTCGACATTTTGTAACCGCAATGCCATGGGTTACCGTGTTCTTCTTTAATGGCCTTATAATATCAGTCACAATGTTCTACTACTTAAAAGCTGGATGGATTGGAAACGATGCTATCTCACCAATCATTGGTGAACATGATCCGTATTATCACGTTTCCGCAAGGGAGCAACATCATATCCGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCCGTTTTATCATCTATAGCTATCGTTAGACGAATTCTTATGGCAACATCTGTACTCAAGGCAAGTGTAGCTGCCAAGGTGATTGGAGAAGTTCATGCTCTAATAATATTCCCGATTGTACCATATTTAATCCTCGCAGTCTTTTACATGTTTTGGTTATCGGCTGCTCTTAATCTTTTTAGTTCGGGTCAAATAGTCCGCAATGACTGCAACACAAATTGTTGTGCGTACGATCTTAAAGCCAAACGCGTCAGTTGTGACGATTGTTGCGGTTATAGTATCCATTACACCCCTCACATAGCCGCTTCCATTCTGTTCCACTTGTTCGGATGCTATTGGGCCACTCAGTTTATCATCGCGTGTTCTTCAACCGTGATTGCGGGCTCCGTCGCTTCATACTATTGGGCTCGTGGGGAATCTTCAACGACTATTCCGTTTCTTCCGGTTTTTTCGTCAATGAAGCTGCTCATGCGCTATAGCCTTGGCTCGGTGGCTATTGGTTCCTTGATTGTATCGTTTGTTGAGTCGACTCAGTTTATACTCGAGGCTGTTCGCCGGAGACTTAAAGTTGCTGACATCATGCCCGAAAACTGGATTAAAAGAATGTTGTTTTATACTTCGCGGGTTTGCTTGAAATGTATTGAATTGACCGTGAAATCTGTTAACCGCAATGCATACATTATGGTGTGTTGGGGTTTAGGATATGTGGTTGCGACCCTTTTCTTTGCGGTGGTGGAAATGTCGATTGATACGATTATACTTTCGTATTGTCAGGATGCGGAGGAACATCAAGGGACCGCACATTATGCGCCTCCGCTTTTGATCGAAACATTTGATGAACAGAATGAGGTGCAAAGAATTGCACAGTAA 1869 41.41 MRGLMGKYPSSDGNGEVGGANGIIKTNRKCRDVVFLVFFIAFWIAMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFNLHELELKYYVNPNQVYQSGLKNSGAKLSNARTICLLDCPTPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYYADLTPELRNSSLQLQGPCYPVIFPSVNVYWTCQFVDRPSNVSLTHWKQLNGLTIDDDMVIDKSIHNSINQRSSVLKRYVADVGKSWPVLIVCGGLLPLGLSLLWLLMIRHFVTAMPWVTVFFFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKASVAAKVIGEVHALIIFPIVPYLILAVFYMFWLSAALNLFSSGQIVRNDCNTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTQFILEAVRRRLKVADIMPENWIKRMLFYTSRVCLKCIELTVKSVNRNAYIMVCWGLGYVVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEQNEVQRIAQ 622
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g00720 622 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 561 615 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Hetu31g00720 622 Pfam Plasma-membrane choline transporter 326 562 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g00720 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299174 Hetu31g00720 Hetu32g00778
300003 Hetu31g00720 Hetu33g00842
409892 Hetu16g02524 Hetu31g00720
410532 Hetu17g02375 Hetu31g00720
411290 Hetu18g02692 Hetu31g00720
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr31:31316913 Hetu44g02188 Hetu-Chr44:124412780 dispersed
Hetu Hetu-Chr41:110010063 Hetu31g00720 Hetu-Chr31:31316913 transposed
Hetu Hetu-Chr16:132660553 Hetu31g00720 Hetu-Chr31:31316913 wgd
Hetu Hetu-Chr17:124354572 Hetu31g00720 Hetu-Chr31:31316913 wgd
Hetu Hetu-Chr18:133508640 Hetu31g00720 Hetu-Chr31:31316913 wgd
Hetu Hetu-Chr31:31316913 Hetu32g00778 Hetu-Chr32:34191630 wgd
Hetu Hetu-Chr31:31316913 Hetu33g00842 Hetu-Chr33:34351927 wgd