AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g00744 ATGAACCCGTCACAGCAAATGTTTGCTGCTGATTTTTCCAACCGGTTAGTGTTAAAGAACTCCATAATGACTCATAAACAAGAGACTTTGCTTGGTTCCGGAGCTCTTGTGGCGATTACCGTTCTTTTATCACTGAAGTTGTTTAGTGATCATCTTTCTCATTGGAAGAAACCCAAAGAACAGAAGGCGATTCTAGTGATAATTCTCATGGCACCCATTTATGCCGTTGATTCTTACGTTGGCTTGCTTGATATTCGTGGTAGTGAGACGTTTTTTGTGTTCTTGGATTCGATCAAAGAATGTTACGAGGGTGTGGTGATGGCAAAGTTCTTGGCTCTGCTGTACACGTATTTGAATATATCTATTACCAAGAACATCGTCCCGGATGAGATCAAAGGAAGAGAGATTCATCATTCGTTCCCAATGACACTTTTTCAAGTAAATTCGAGTAAACCTCATTCAGTTCGTTTGAACCATCAAAACCTAAAGCTCCTCAAGTATTGGACATGGCAGTTTGTAGTGATCCGTCCTGTGTGCTCTGTTCTGATGATAGTTTTGCAACTGCTTGATATATATCCCGATTGGCTTAGCTGGACAATCACTATGATCTTGAATGTATCGGTTTCCTTAGCGTTATACGCACTTGTGGTCTTCTATCATGTATTTGCTAAAGAATTGGCACCACATAAGCCACTCGCCAAGTTCTTATGTGTCAAAGGGATCGTTTTCTTCTGTTTTTGGCAGGGAATTGTCTTGAGTGGTCTTGCGGCAGTTGGCATAATCAAATCAGAACACTTCTGGCTCGATGTGGCACATATCCAGCAAGCGTTGCAAAACGCGTTGGTGATTGTGGAGATGGTGTTTTTTGCATTCTTTCAGCTGTATGCGTACTCTGCTGCACCATACAAGGATCTTGATGTGAAAGAAAAGAAGAAAGAGTGA 942 41.51 MNPSQQMFAADFSNRLVLKNSIMTHKQETLLGSGALVAITVLLSLKLFSDHLSHWKKPKEQKAILVIILMAPIYAVDSYVGLLDIRGSETFFVFLDSIKECYEGVVMAKFLALLYTYLNISITKNIVPDEIKGREIHHSFPMTLFQVNSSKPHSVRLNHQNLKLLKYWTWQFVVIRPVCSVLMIVLQLLDIYPDWLSWTITMILNVSVSLALYALVVFYHVFAKELAPHKPLAKFLCVKGIVFFCFWQGIVLSGLAAVGIIKSEHFWLDVAHIQQALQNALVIVEMVFFAFFQLYAYSAAPYKDLDVKEKKKE 313
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g00744 313 Pfam Organic solute transporter Ostalpha 32 302 IPR005178 -
Hetu31g00744 313 PANTHER ORGANIC SOLUTE TRANSPORTER-RELATED 26 306 IPR005178 GO:0005215(PANTHER)|GO:0006810(PANTHER)|GO:0016021(PANTHER)
Hetu31g00744 313 SMART Solute-trans-a-2 29 302 IPR005178 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g00744 K14360 organic solute transporter subunit alpha
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Event-related genes

Select Gene_1 Gene_2 Event_name
111394 Hetu31g00744 Hetu7g01567
111395 Hetu31g00744 Hetu8g01424
299186 Hetu31g00744 Hetu32g00800
300015 Hetu31g00744 Hetu33g00867
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr31:32280821 Hetu7g01569 Hetu-Chr7:63687919 dispersed
Hetu Hetu-Chr31:32280821 Hetu32g00800 Hetu-Chr32:35179494 wgd
Hetu Hetu-Chr31:32280821 Hetu33g00867 Hetu-Chr33:35426720 wgd
Hetu Hetu-Chr31:32280821 Hetu7g01567 Hetu-Chr7:63676468 wgd
Hetu Hetu-Chr31:32280821 Hetu8g01424 Hetu-Chr8:60384247 wgd
Hetu Hetu-Chr31:32280821 Hetu9g01585 Hetu-Chr9:64732929 wgd