AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g00910 ATGGTAAAGTGGCCTGCATTAGTTATCCTTAAACCCTCAAAATCACCAACGCCGCCGTATTGCAGATGGATGAGGGTTCAAATCGCTCGTAACTTCTTCTTCTTCCCCTTACCCTTCGATCATCATCTCCTTAAACTTCGCCCCAACAATAACCTTTTCCGCCGCTTCAATCAATCAACTCTTGTTTCACCACTACCAGAATCTTTCACCATGGGTTCGCAAGCAGCACCGGACCTCGAGTGGCCCGCTAACAAAGTTAGAGATACGTTTATTAGCTTCTTCCAAGATCGGGACCATCGTTATTGGAAATCCAGCCCGGTTGTTCCGGTCAACGATCCCACTCTTCTGTTTGCCAATGCCGGAATGAATCAGTACAAGCCTATTTTCTTGGGTACTGCTGATCCTAACACCGATTTAAGCAAACTGAAGCGTGCCTGCAACACCCAAAAATGCATCCGAGCTGGCGGGAAGCATAACGATCTTGACGATGTTGGCAAAGACACATATCATCACACCTTCTTTGAAATGCTCGGTAATTGGTCATTTGGTGATTACTTTAAAGAAGAGGCCATCGGTTGGGCTTGGGAACTTCTCACAACGGTTTATAAACTACCTACTGATCGGATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCCGCTGATACTGAAGCTAGAGATATATGGCTCAAATATTTACCATCTGCACGGGTTCTGCCATTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACCGGACCTTGTGGGCCCTGTACTGAAATACACTTCGATAGAGTCGGTGGCCGTGACGCTGCTGATTTGGTTAATAACGATGACCCTACATTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCTGACGGTTCTTTAAAACCTCTGCCCGCCAAACACGTGGATACTGGAATGGGTTTCGAAAGATTAACGTCAATTCTTCAGAACAAAATGAGCAACTATGATACAGATGTTTTCATACCTATATTTGATGCTATCCAAGCGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTCGATGGGATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATCGCAGACGGTTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGGACAGAAGTACTGAAAGCACAACAAGGATTTTTCAACGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCCGAGCTAAAACAACAAGAGGCGCGCATTAAGGAGATTATAGCTGAAGAGGAAGCAAGTTTCGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACAGCTCAAGATGTTCAAGGAAAGATATTTAGTGGACAGGATGCGTTTGTTTTGTGGGATACTTATGGATTCCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTAGTTGATGTTGAGGGCTTTAATATCGCTATGAACGAAGCTAGAGAACGATCAAGAAACGCCCAGAATAAGCAAGCCGCTGTTACAATCGTCATGGACGCAGATGCCACCTCAGCACTGCATAAGAGAGTCGTGGCTACAACAAACGACAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGCTCCGAGTATGTGGACCGTGCTGATGCTGGCGATGACGTCGGCATAATTCTCGAGAGCACTAGTTTTTATGCTGAGCAAGGTGGTCAGATATATGATACTGGACTACTTGGTGGCCCATCTGGATCATTTGAAGTCTGTAACGTTCAAATTTACGGTGGTTTTGTTCTTCATCTTGGTAAAATTAGTGGGGAGTCGGCTCGGTTTAACGTCGGTGATGAAGTAATTTGTAAGGTGGACTACGAAAGGCGTCAACGCATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGAGTCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCACGGGAAACCCGTAAAGCCCGAAGACCTTCGTAGAATTGAATCAATCGTGAATGAACAAATTAAAGCTGAGCTGGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAACGAGTAAACGGTTTGCGTGCTGTTTTCGGTGAAGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGCCGACAAGTGGACGAATTATTGGCTGATCCTGAAAATGAACAATGGTCGTCGATATCTGCAGAACTTTGTGGCGGGACCCATATTTCAAATACACGCGAGGCGAAAGCGTTTGCACTTTTGTCTGAAGAGGGAATTGCTAAGGGGATTAGAAGAGTTACTGCCGTAACAACCGACTATGCTTTTGAAGCTATTAAAAAGGCGTCTGAGCTTGAGCTGGAAGTTGATCTCGCATCTAAACTGGAAGGAAGCCTGCTTGAACAGAAAGTGACATCATTAAATGGTCAAGTAGAGTCTGCCTCAATTCCAACCGCAAAGAAGGCTGATCTTAAGGCAAAAATCTCCATCCTTCAGAATCAAGTAATAAAGGCAAAAAAGAAGACTGCTGAAGAGAACATACGTAAAGCTGTTGAAGCTGCTACTAAGGCAGCAGAAGTTGCATCTTCTGAGGGGAAATCCTTCTGTATTTCACAAGTTGGTGTAGGGTCAGACACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAAAAGGGAATGGCGGTGATGGTTTTTACCACCGATGAACAATCAAAGAAGGCACTAGTTTGTGCGGGTGTGCCAGAAAAAAGCGATAAAAGCAACCAATTGAAGGTTTTAGATTGGCTCAAGGCTGCACTGAAGCCGCTAGAAGGAAAAGGCGGTGGAGGGAAAGGCGGTCTTGCTCAAGGCCAGGGTCCCGATATAAAACACGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCGGCGCTCAAACTGGGCTGA 3078 44.8 MVKWPALVILKPSKSPTPPYCRWMRVQIARNFFFFPLPFDHHLLKLRPNNNLFRRFNQSTLVSPLPESFTMGSQAAPDLEWPANKVRDTFISFFQDRDHRYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTDLSKLKRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVYKLPTDRIYATYFGGDEKLGLPADTEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQAATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEARIKEIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNIAMNEARERSRNAQNKQAAVTIVMDADATSALHKRVVATTNDSFKFTWFKDHKSVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIYDTGLLGGPSGSFEVCNVQIYGGFVLHLGKISGESARFNVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGSHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDELLADPENEQWSSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDLASKLEGSLLEQKVTSLNGQVESASIPTAKKADLKAKISILQNQVIKAKKKTAEENIRKAVEAATKAAEVASSEGKSFCISQVGVGSDTAAIREAVVKVMEQKGMAVMVFTTDEQSKKALVCAGVPEKSDKSNQLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1025
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g00910 1025 SMART tRNA-SAD-4 758 817 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Hetu31g00910 1025 Gene3D Bira Bifunctional Protein; Domain 2 82 330 IPR045864 -
Hetu31g00910 1025 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 758 816 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Hetu31g00910 1025 SUPERFAMILY Class II aaRS and biotin synthetases 82 333 IPR045864 -
Hetu31g00910 1025 Coils Coil 870 902 - -
Hetu31g00910 1025 Pfam DHHA1 domain 873 1019 IPR003156 GO:0003676(InterPro)
Hetu31g00910 1025 FunFam Alanine--tRNA ligase 555 655 - -
Hetu31g00910 1025 FunFam Alanine--tRNA ligase, cytoplasmic 657 832 - -
Hetu31g00910 1025 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 81 830 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Hetu31g00910 1025 Hamap Alanine--tRNA ligase [alaS]. 81 1024 IPR023033 GO:0004813(InterPro)
Hetu31g00910 1025 Gene3D - 657 833 - -
Hetu31g00910 1025 Gene3D - 583 656 - -
Hetu31g00910 1025 Coils Coil 512 532 - -
Hetu31g00910 1025 SUPERFAMILY Translation proteins 587 656 IPR009000 -
Hetu31g00910 1025 Gene3D - 912 1020 - -
Hetu31g00910 1025 SUPERFAMILY ThrRS-AlaRS common domain 656 827 IPR018163 GO:0000166(InterPro)
Hetu31g00910 1025 FunFam Alanine--tRNA ligase, cytoplasmic 80 330 - -
Hetu31g00910 1025 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 334 534 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Hetu31g00910 1025 FunFam Alanine--tRNA ligase 912 1020 - -
Hetu31g00910 1025 PANTHER ALANYL-TRNA SYNTHETASE 78 1021 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Hetu31g00910 1025 CDD AlaRS-core 83 329 - -
Hetu31g00910 1025 NCBIfam alanine--tRNA ligase 85 1003 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 PRINTS Alanyl-tRNA synthetase signature 287 298 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 PRINTS Alanyl-tRNA synthetase signature 159 170 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 PRINTS Alanyl-tRNA synthetase signature 314 327 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 PRINTS Alanyl-tRNA synthetase signature 371 387 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 PRINTS Alanyl-tRNA synthetase signature 395 408 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu31g00910 1025 Pfam tRNA synthetases class II (A) 85 660 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g00910 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
299235 Hetu31g00910 Hetu32g00968
300065 Hetu31g00910 Hetu33g01019
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3363339 Hetu Hetu31g00910 Hetu-Chr31:40886080 Hetu32g00968 Hetu-Chr32:44668499
3520871 Hetu Hetu37g01419 Hetu-Chr37:80075931 Hetu31g00910 Hetu-Chr31:40886080
3624439 Hetu Hetu31g00910 Hetu-Chr31:40886080 Hetu32g00967 Hetu-Chr32:44667316
3625081 Hetu Hetu31g00910 Hetu-Chr31:40886080 Hetu33g01019 Hetu-Chr33:43367800