AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu31g01056 ATGGAGAGATTCGGAGGCGCTGGTGGTGATACTCTACAACTTGATTCGAATTCATCAGGTGGTGCTGTATTTGATGCGTCACAGTATGCGTTCTTTGGTAATGAAGTGCTTGAAGAAATTGAGTTGGGAGGGCTGGAGGATGACGGAGATCTTTCGGAAGCTAAGTTTGAGGATGATGAGCATCTGTTGGAGCAGGAAGAGGGTGTGTTTCCAGGAATTGACGATCTTTCGACAACATTTTTGAAGCTCAACAAAGATGGCATGGGACCAAGCATTGGAGGTTTTGGTGACCGAGGATCCAGAGAAACTTCATCTGCAGCTGACTGGGCACAGGGAGGAGACTACACCAACTGGGTGCTTGATCAAGATAATTTCGAAGCAGAAAGGGGTCAACAACAAACCAATAAATGGTCAAACTCTTCGTTTCCTCTTCAAGATCCATCAACGCTTCTTCACAGAACATCATCCTATGAATCAAACCAATATCTTCACAGAACATCATCGTACCCCGAGCAACATCAACACCACAACCTTAACCAGCACCTGATAGATGAATCAAAGAATCTTCATAGAACATCATCTTACCCTGAACAGCAGCAACACCACCACCTTGGTCAGCAGCATTTGCCTTTCTCTAGTGAACCGGTTCCTGTTCCTAAATCATCCTTCATTTCATACCCTCCTCCAGGTGGCGGTGGGTCCCCCCAATTTTCACCAAATCATCAATCACGCTATCTTAACCCTCCGTATCACCCCACTGGACTCCAAACTGGACCATCCCTTTCCAGTATATCTCCGCAGCTTCAGATGGGTGGGGTGCCACATGGATCACCATTTGGCGGGAATTTTAATCTGCCTCAGTTTCGTCCTCCTGCTCCACCTGTCAATAGCCGGCTACAAAACCAATTTGGTGGGAATTTGCCTGATCTTTCAAATGGTATGATGCAACAACATTTCACTCACAATAACAGTATACCGCCTCAACAACACAGGATGCACCAACAATTTCAGCCGCCTTTTGGTGGTCATTTATCCGGGATGCAGCCGCTAATGAACCAGCATCCACCTCTAATGAACAATTTTGAACCCCTTGGGATTGGTTCAAGAGATTTGAGACCTAAGTCATTGGCCAAAGGTAGACCGGGTCAGGGACCGAGGGGCTTTGACACCAGTGGATGGCCACAGTTCAAATCAAAATACATGACATCTGATGAGATTGAAAATATTCTCAGAATGCAACTTGCTGCTACACACAGTAATGATCCTTATGTAGACGATTACTATCACCAAGCTTGTTTAGCAAACAAATCTAGCGGTGCAAAATTAAGACACCATTTTTGCCCCACCCAATTAAGGGACTGCCCACCCAGAGCCCGTGCTGCTAACGAACCACATGCATTTCTTCAAGTTGATGCTTTGGGCCGGATCTCTTTTTCCTCCATACGCCGTCCCCGCCCACTTCTTGAAGTTGACACACCAAAGTCGACCACTAGTGGGATCACTGATCAGAAATTGTTGGACAAACCTTTGGAACAAGAACCTATGCTTGCAGCTAGAGTCACAATTGAAGACGGTATTTGTCTTCTTCTAGACGTTGATGATATTAACCGTTTTCTACAGTTCAATCAGCTCCAGGATGGTGGGGCCCAGTTACGGCAGAGGCGGCAAGTCCTTCTGGAAGGTTTAGCAACGTCGCTTCACCTTGTTGACCCGTTTGGCAAGAACGGTCAAACGGATGAGTCGGCTCAAAAGGACGATTTCATCTTTTTACGGCTGGCTTCTCTTTCAAAGGGACGGAAGCTAATTTCAAGTTATCTCAAACATCTTGACCCGGGAAGCGAGTTGACTCGTGTGGTTTGCATGACAATTTTCCGCCATTTAAGGTTTTTATTTGGAGTTGTTCCTGTTGATCCACAAGCAGCAGAAACTATTAATAATCTTGTAATAACTGTTTCGTCCTCGGTTCGTGGAATGGAGCTTAGATCACTCGGTACCTGTCTTGCATCTGTTGTTTGTTCTCCAGAGCAGCCCCCACTTCGTCCTGTTGGAAGTCCTGCGGGGGATGGGGCTTCTGTTGTGTTAAAATCTGTACTCGAAAGAGCAACCGAGCTTTTAACCGACCCAAATGCTGCCACGAGCTGCAGCCCAACAAATCGGGATTTTTGGCAGGCATCTTTTGACGCTTTTTTTGGGCTTCTCACCAAATACTGTGTTAGTAAATATGAAAGCGTTGTCCAGTCGTTGCTGAGCCAGGGGTGTGGTCCATCCGAGATGGCGGTTATGGGGTCAGATGCTGCAAAAGCTATTAGTCGGGAAATGCCCATCGAACTCCTACGGGCCAGCCTTCCTCATACAAACGAAAACCAGAGGAAGGTGTTACTTGATTTTGCTCAACGGTCCATGCCTGTTCATAGCGCTTGA 2421 46.59 MERFGGAGGDTLQLDSNSSGGAVFDASQYAFFGNEVLEEIELGGLEDDGDLSEAKFEDDEHLLEQEEGVFPGIDDLSTTFLKLNKDGMGPSIGGFGDRGSRETSSAADWAQGGDYTNWVLDQDNFEAERGQQQTNKWSNSSFPLQDPSTLLHRTSSYESNQYLHRTSSYPEQHQHHNLNQHLIDESKNLHRTSSYPEQQQHHHLGQQHLPFSSEPVPVPKSSFISYPPPGGGGSPQFSPNHQSRYLNPPYHPTGLQTGPSLSSISPQLQMGGVPHGSPFGGNFNLPQFRPPAPPVNSRLQNQFGGNLPDLSNGMMQQHFTHNNSIPPQQHRMHQQFQPPFGGHLSGMQPLMNQHPPLMNNFEPLGIGSRDLRPKSLAKGRPGQGPRGFDTSGWPQFKSKYMTSDEIENILRMQLAATHSNDPYVDDYYHQACLANKSSGAKLRHHFCPTQLRDCPPRARAANEPHAFLQVDALGRISFSSIRRPRPLLEVDTPKSTTSGITDQKLLDKPLEQEPMLAARVTIEDGICLLLDVDDINRFLQFNQLQDGGAQLRQRRQVLLEGLATSLHLVDPFGKNGQTDESAQKDDFIFLRLASLSKGRKLISSYLKHLDPGSELTRVVCMTIFRHLRFLFGVVPVDPQAAETINNLVITVSSSVRGMELRSLGTCLASVVCSPEQPPLRPVGSPAGDGASVVLKSVLERATELLTDPNAATSCSPTNRDFWQASFDAFFGLLTKYCVSKYESVVQSLLSQGCGPSEMAVMGSDAAKAISREMPIELLRASLPHTNENQRKVLLDFAQRSMPVHSA 806
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu31g01056 806 MobiDBLite consensus disorder prediction 367 395 - -
Hetu31g01056 806 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 17 803 IPR039900 GO:0000290(PANTHER)|GO:0000290(InterPro)|GO:0000932(PANTHER)|GO:0003723(PANTHER)|GO:0033962(PANTHER)
Hetu31g01056 806 MobiDBLite consensus disorder prediction 190 246 - -
Hetu31g01056 806 MobiDBLite consensus disorder prediction 128 149 - -
Hetu31g01056 806 MobiDBLite consensus disorder prediction 192 207 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu31g01056 K12617 DNA topoisomerase 2-associated protein PAT1
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Event-related genes

Select Gene_1 Gene_2 Event_name
299254 Hetu31g01056 Hetu32g01092
300100 Hetu31g01056 Hetu33g01153
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr31:47602376 Hetu33g01156 Hetu-Chr33:49530648 dispersed
Hetu Hetu-Chr31:47602376 Hetu31g01058 Hetu-Chr31:47883611 proximal
Hetu Hetu-Chr31:47546906 Hetu31g01056 Hetu-Chr31:47602376 tandem