AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00490 ATGTCGTTGACCATCAAACAAGAAGTCCAAGAGGAACCCAGAAATGGGTTTCAAGAAATTGATGATGAGAGTCTTAGAAAGTGGAAAGAACAGCTTCTTGGAAATGTTGATATTAATGATGTTGGAGAGTCACTCGAACCGGAAGTGAAAATCATTAGTCTTTCGATCTCGTCTCCTGGGAGATCTGACATTGTTCTTGCGATACCCGAAGATGGAAAGCCGAAAGGGTTATGGTTTACGCTGAAAGAAGGTTGTCGTTACAGTCTGCGGTTCAAGTTTCAAGTTGGATGTAATATTGTTTCGGGTTTAAAGTACACCAACAACGTATGGAGAACTCGTGTCAGAGTGGATAGAGTGAAACAAATGCTTGGAACTTTTAGTCCCCAACAAGAAGCATACACTTATGAGATGCCTGAAGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACAAAGTTTGTTGATGATGACAACAAATGCTACTTGGAGATCAACTATGCGTTTGATATCAGAAAAGATTGGGCCAACTCTGAATAA 552 40.4 MSLTIKQEVQEEPRNGFQEIDDESLRKWKEQLLGNVDINDVGESLEPEVKIISLSISSPGRSDIVLAIPEDGKPKGLWFTLKEGCRYSLRFKFQVGCNIVSGLKYTNNVWRTRVRVDRVKQMLGTFSPQQEAYTYEMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEINYAFDIRKDWANSE 183
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00490 183 PRINTS RHO protein GDP dissociation inhibitor signature 158 175 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hetu32g00490 183 PRINTS RHO protein GDP dissociation inhibitor signature 116 131 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hetu32g00490 183 PRINTS RHO protein GDP dissociation inhibitor signature 99 115 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hetu32g00490 183 PRINTS RHO protein GDP dissociation inhibitor signature 132 144 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hetu32g00490 183 SUPERFAMILY E set domains 20 180 IPR014756 -
Hetu32g00490 183 FunFam Rho GDP-dissociation inhibitor 1 6 181 - -
Hetu32g00490 183 Pfam RHO protein GDP dissociation inhibitor 19 178 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Hetu32g00490 183 Gene3D Coagulation Factor XIII, subunit A, domain 1 7 181 IPR024792 -
Hetu32g00490 183 PANTHER RHO GDP-DISSOCIATION INHIBITOR 13 179 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00490 K12462 Rho GDP-dissociation inhibitor
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
300926 Hetu32g00490 Hetu33g00583
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:18770200 Hetu7g01841 Hetu-Chr7:77131588 dispersed
Hetu Hetu-Chr32:18770200 Hetu33g00583 Hetu-Chr33:18599401 wgd