AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00540 ATGAGTGGGTCTAGGGTTTCCATTCCGAACAATGTACGGAAGATGATCCAGAACATTAAGGAGATCACGGGTAATCATAGTGAAGATGAGATTTATGCAATGCTTAAAGATTGTTCTATGGATCCGAATGAGACCACCCAGAAGCTCCTTTTGCAGGATCCATTTCATGAAGTTAAGAGGAAGGGGCACCGAAAAAAGGAGAATGTGACTAAAGAACCTACGGAGCCCAGATGGAAACCTGGGATGCAGGGGAGGGGGAATAGGGGTGGAAGGGGAAACTACTCATCTCGTCGCATTCCTAATGATGCAGGTGGTGGCCGGGCGTCAGTTTCCGCAAAGGAAAATGGAATACGTAAAGGTGCAGATAATGGTCCAAATCTGTCAACGGCTCAGGGTCAGAAGAATAAAGAGACACTTGTGGCTAAAAGCTCTTTGCTTGCTGTACCTGATGGAACTGAACATTTGTCTGTGGGAAGTGATGAAAAGAAATCCGAAGTGGTTCCCGTTGTCGAGGCAATTAAGGGCCCCACTGTTGTCGGGAGTGTACGTGTGCCGCTCATCTCGAGTACCATTGACACATCAGCTTCTAACCCACCGTCACCTTCGGAAGGGTTATATTTGTCTGATAAAGATCCTATTCTGATGCCTTCACAAGATTCACGGCTCCCTGTGGGTACAATCAAACGTGAGGTTGGAAGTCAACAAACTCCAGCTGACCAAGTTCATGAGACCCCCAATGAGATCGAATCAATTGCATGTGAGTATCGTTTTCTTGTTTACCGGCACTGTAATATTGTATGTAATATGAATTTAATCGATGTTGCAGCTGGTTCGGAGGTTGGAAACTCTTCCGTGCAAGTGAAGGCACCGTCTTCGCATGTCTCGTTTTCCGTTTCCAGGCCTTCGTCAAACTATAATAATCGACTGCAACAAGCAACTGGGCCTCAAAAAGTTGGTCCAAGTATGGAATGGAAACCGAAACAGACAAATCCAACTCTCGCTCAAGGGACCGGTTCAACCGAGTCAATTAAGCTGCCTGTGGTTGAACCCGAAAGTCAAACTCCAAACCCTTTTGCAGCGTGTGATCTTGATTCGAAGGACGCAGTTCACGGGCTGGAGAAGAAGCTAGAGGAATCACACATATCAGATAATCAACATGTTATTATTCCAAACCACCTTCATGTTCCCGAAGCTGAAAAACTCGGGTTCTACTTTGGGAGTTTTGACCCTAGTTTCAGCCTTAATGCGACCTCCTCAAATGGGCCTGGGCCTGTGAGCGACAAAAGTTCCGAAGCTTCTGAGGTGGTTGATGAGAGTATCGACGAGCAGCCCAGAAATCAAAATAATGCATTGGCAAGTGCTGATGATGAAGATCATCCATCATCATCTAATAACATACCCGAGAATCTATCAAACGAAGGTGACATGTCGTCAAATTCGGGCACCGATCACCATGAATCCAAGCAAGAAACTTCACTCCCAACCGCAAGTCATCAGTACCCGATTCTTCAAACATCTCCTAACTATAGTTTTGGCTTCATTCCACCGATGATCGGGACCCACCTCTCGTCTTTTGAACCCAACGAGTCTCATAGTCATGATGGTTCTCAAGTCCCAAACTTTGTAGTTCAGCAACCGTTTGACCCAGCAAGCTATTATGCTCAGTTTTATCGTTCTGGTGCAGACGTGGATGGCCGCATATCACCGTTTCATTCAACTGGGGTTCCAACTAAGTTTAATGCAAATATTCCTGTGTTATCTCCACAAGCTTCTCATTCTTCTCAAGAGGTTTGTGTTGGGAACTCACTAATGTTATCCGGTGCCGGTCCAACACCAATAGCCACCACACAAACCGGCGGATTTATGCAAACCTCCATAGCCGTAACTCAACAACCACTATCCGTTTTCAGGCAACCAACCGGGGTTCATTTACCGCATTACCCTCCAAATTACATCCCATATGGACCGTTTTACCCCCCGTTTTACGTACCTCAACCAGCTATTCACCAATTTTTGAGTAATAATACATTCCCGCAACAACCTCAAGCTGGTAATATGTACCCGGCCCCACCATTGACTAGCCCTAAATACCCACTTCCGCAATACAAAACGGGTGGTAACACAGGGAACCCGGTTAATATTGGAATGCCCGGAAGCTATGGACCGTATGGTTTAAACCCAGCTGGGTATAATTCGGGTTCGGCTAATACAGCTGGCAATTCAACCCCCGATGAAGACCTTGGTGGGTCCCAGTTTAAGGAAAGTAACGTCTACATTACCGGACAGCAGAGTGAAGGTTCAGGTGTATGGATGGCTGCACCGGGTCGAGACATGTCTGGTCCGCAGGCTAATTCTTTCTATAACATTCCGCAAGGCGGTCAAGTTGCGTATACACCGACACAAGCCAGCCACGGGACTTTTGCTAGTATTTACCACCACCACCACCACCACCACCCGGCTCAACCAGTAACCACCAGTGCAGTTCACCCGCTTCTTCAACAGTCACAAACGCTGGCTGGGCCCGGCAGTGACATGGGGGGGCCCACACCGCAAATCAACTGGCCTAATAACTACTGA 2577 47.23 MSGSRVSIPNNVRKMIQNIKEITGNHSEDEIYAMLKDCSMDPNETTQKLLLQDPFHEVKRKGHRKKENVTKEPTEPRWKPGMQGRGNRGGRGNYSSRRIPNDAGGGRASVSAKENGIRKGADNGPNLSTAQGQKNKETLVAKSSLLAVPDGTEHLSVGSDEKKSEVVPVVEAIKGPTVVGSVRVPLISSTIDTSASNPPSPSEGLYLSDKDPILMPSQDSRLPVGTIKREVGSQQTPADQVHETPNEIESIACEYRFLVYRHCNIVCNMNLIDVAAGSEVGNSSVQVKAPSSHVSFSVSRPSSNYNNRLQQATGPQKVGPSMEWKPKQTNPTLAQGTGSTESIKLPVVEPESQTPNPFAACDLDSKDAVHGLEKKLEESHISDNQHVIIPNHLHVPEAEKLGFYFGSFDPSFSLNATSSNGPGPVSDKSSEASEVVDESIDEQPRNQNNALASADDEDHPSSSNNIPENLSNEGDMSSNSGTDHHESKQETSLPTASHQYPILQTSPNYSFGFIPPMIGTHLSSFEPNESHSHDGSQVPNFVVQQPFDPASYYAQFYRSGADVDGRISPFHSTGVPTKFNANIPVLSPQASHSSQEVCVGNSLMLSGAGPTPIATTQTGGFMQTSIAVTQQPLSVFRQPTGVHLPHYPPNYIPYGPFYPPFYVPQPAIHQFLSNNTFPQQPQAGNMYPAPPLTSPKYPLPQYKTGGNTGNPVNIGMPGSYGPYGLNPAGYNSGSANTAGNSTPDEDLGGSQFKESNVYITGQQSEGSGVWMAAPGRDMSGPQANSFYNIPQGGQVAYTPTQASHGTFASIYHHHHHHHPAQPVTTSAVHPLLQQSQTLAGPGSDMGGPTPQINWPNNY 858
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00540 858 Pfam GBF-interacting protein 1 N-terminal 8 67 IPR009719 -
Hetu32g00540 858 MobiDBLite consensus disorder prediction 58 133 - -
Hetu32g00540 858 SUPERFAMILY UBA-like 8 68 IPR009060 GO:0005515(InterPro)
Hetu32g00540 858 MobiDBLite consensus disorder prediction 416 497 - -
Hetu32g00540 858 PANTHER FLOCCULATION PROTEIN (DUF1296) 1 858 IPR044277 GO:0051082(PANTHER)
Hetu32g00540 858 MobiDBLite consensus disorder prediction 836 858 - -
Hetu32g00540 858 MobiDBLite consensus disorder prediction 295 339 - -
Hetu32g00540 858 MobiDBLite consensus disorder prediction 442 478 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00540 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
111483 Hetu32g00540 Hetu7g01777
299106 Hetu31g00477 Hetu32g00540
300943 Hetu32g00540 Hetu33g00638
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:21112826 Hetu8g01620 Hetu-Chr8:70475327 dispersed
Hetu Hetu-Chr23:118701468 Hetu32g00540 Hetu-Chr32:21112826 transposed
Hetu Hetu-Chr31:16176790 Hetu32g00540 Hetu-Chr32:21112826 wgd
Hetu Hetu-Chr32:21112826 Hetu33g00638 Hetu-Chr33:21289756 wgd