AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00739 ATGGCCGATGAGAAAGAAGAGAAGAGCAAAAGCAAGAAAAGGGGTTTTTTCTCTCGAATTTGGAACGCATTGTTTGGATTACGTGGTGATGATTTTGAGAAGAGGCTGCAGTATATTTCTAAAGAAGAAGCTGCTCTTATTTCTAGAATGAAAAGAAGATCTTTTAGATGGAGAACAACTGCTAGAAATTTAATCATCTTTTCCCTTCTTCTTGAGATGGTTGCAGTGGGTTATGCTATAATGACAACAAGAACAGTGGTTATGGATTGGAGAACGAGATCGTTACGGGTTCTACCTATGTTTCTTTTGCCTGCTTTGTCGTTCGGTTTGTATTATGGGCTTTCGAGTTTCACTAAATTCTGTGATCGAAGGGATCAGAAGACGTTAGATGGGCTTCGAGAAGAAAGGCAAGCAAAAATCGATGAGCTTAAAGAGAGAACTAATTATTACATCACTCAGCAGCTCATTCAGAAATATGATCCGGATCCAGCGGCAAAAGCAGCTGCTGCAACTGTTCTTGCATCGAAACTGGGTGCAGATGCGGGCCTGAAAGTGTTTCTTGGAGACGAACTACAACCAGACGCACATACCACAGGGAAAAGCAGCGATGTTGACCTCCAACAAACTAGCGGTCTCAGGAAACGAAACCAAGCAAACCCTAAATCTCCTGGAAGCAATCCAGGCCATCATGTCGGTAAAGAAACACCTCAATTTGGCGGAAATGAGGTTCCCGGAAATTCGCCACGTGGACAGCTTGTTGTCGAGCATCATAATCCCGCAGCTTCAGGCGCTCAAGATGGAGGTTGGATCGCTAGAATTGCCGCATTGCTAGTAGGCGAGGACCCCACACAGTCGTATGCACTTATATGTGGAAATTGCCATATGCATAATGGGCTTGCGAGAAAGGAGGAGTTCCCGTTCATCACGTACTATTGTCCTCATTGTCATGCTTTGAATAAACCGAAAAATTCTGTACTTCCGTCGGATAAAATGTCTCCTGTTACGGAATCTCCAAAAGTAGCAGGTGCGGATGTTAAGTTGACTGAACAAAGTAACGAGTCAACGAGTGAGAAAGTATCTGCTGCTAGCAGTCCCATGGTAGCTGCAGTGGAAGAGAAAGAAGCAAATGAGAAAATAGTGGCTGCATAG 1149 44.04 MADEKEEKSKSKKRGFFSRIWNALFGLRGDDFEKRLQYISKEEAALISRMKRRSFRWRTTARNLIIFSLLLEMVAVGYAIMTTRTVVMDWRTRSLRVLPMFLLPALSFGLYYGLSSFTKFCDRRDQKTLDGLREERQAKIDELKERTNYYITQQLIQKYDPDPAAKAAAATVLASKLGADAGLKVFLGDELQPDAHTTGKSSDVDLQQTSGLRKRNQANPKSPGSNPGHHVGKETPQFGGNEVPGNSPRGQLVVEHHNPAASGAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCHALNKPKNSVLPSDKMSPVTESPKVAGADVKLTEQSNESTSEKVSAASSPMVAAVEEKEANEKIVAA 382
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00739 382 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 269 319 IPR019273 -
Hetu32g00739 382 MobiDBLite consensus disorder prediction 211 253 - -
Hetu32g00739 382 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 9 361 IPR040115 GO:0071782(PANTHER)|GO:0071786(InterPro)|GO:0071786(PANTHER)
Hetu32g00739 382 MobiDBLite consensus disorder prediction 326 368 - -
Hetu32g00739 382 MobiDBLite consensus disorder prediction 347 362 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00739 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
104553 Hetu10g02306 Hetu32g00739
104988 Hetu11g02388 Hetu32g00739
105422 Hetu12g02208 Hetu32g00739
110703 Hetu28g02594 Hetu32g00739
110944 Hetu29g02635 Hetu32g00739
111278 Hetu30g02639 Hetu32g00739
111488 Hetu32g00739 Hetu7g01678
111489 Hetu32g00739 Hetu8g01524
299157 Hetu31g00682 Hetu32g00739
300989 Hetu32g00739 Hetu33g00802
409904 Hetu16g02584 Hetu32g00739
410547 Hetu17g02440 Hetu32g00739
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr17:129430214 Hetu32g00739 Hetu-Chr32:31735213 dispersed
Hetu Hetu-Chr32:31735213 Hetu42g01526 Hetu-Chr42:58761905 dispersed
Hetu Hetu-Chr10:124836479 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr11:126912153 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr12:122063427 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr16:136765689 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr18:137292737 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr28:175106407 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr29:165072877 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr30:164760569 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr31:28549751 Hetu32g00739 Hetu-Chr32:31735213 wgd
Hetu Hetu-Chr32:31735213 Hetu33g00802 Hetu-Chr33:31653845 wgd
Hetu Hetu-Chr32:31735213 Hetu7g01678 Hetu-Chr7:68229154 wgd
Hetu Hetu-Chr32:31735213 Hetu8g01524 Hetu-Chr8:64278977 wgd