AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00778 ATGAGAGGATTAATGGGAAAATACCCATCAAGTGATGGCAATGGTGAAGTTGGTGGTGCAAATGGGATCATAAAAACCAACAGAAAATGCAGAGATGTTGTCTTTCTTGTTTTTTTCATTGCTTTTTGGATCGCCATGATTGTTAACTCCAGTTTTGCCTTCAATCAAGGAAACCCATTAAGGCTAAATTTCGGGTTGGATTACAAAGGAAATGTATGTGGAGGCAAACACAAAGATTTCAACCTCCATGAGTTGGAACTCAAGTATTACGTTAACCCGAATCAAGTTTACCAAAGCGGATTAAAAAACAGCGGAGCAAAACTCTCTAACGCGCGAACAATATGTTTATTGGATTGCCCAACTCCGTCAGAAGATTCATTGAACTGGGTGTGCGATTACCCCGAAGGAGATATCCGTATTTCATTAGACGATTGGATCGATATGAATTACGATTATTACGCTGATCTAACTCCAGAACTAAGAAACTCTTCTCTTCAGCTTCAAGGTCCTTGTTACCCTGTAATTTTTCCAAGCGTAAACGTTTATTGGACTTGCCAATTTGTTGATCGACCGTCAAACGTGTCGTTAACGCATTGGAAACAATTGAATGGTCTTACCATTGACGATGATATGGTCATAGATAAATCTATTCATAACTCCATTAACCAACGGTCCTCAGTATTGAAGAGATATGTAGCTGATGTTGGAAAATCATGGCCCGTTTTGATTGTGTGCGGAGGACTCTTGCCTCTAGGTTTATCGTTGCTATGGCTTTTAATGATTCGACATTTTGTAACCGCAATGCCATGGGTTACTGTGTTCTTCTTTAATGGCCTTATAATATCAGTCACAATGTTCTACTACTTAAAAGCTGGATGGATTGGAAACGATGCTATCTCACCAATCATTGGTGAACATGATCCGTATTATCACGTTTCCGCAAGGGAGCAACATCATATCCGTGCAGCTGCGTTTCTCATGACTTGTGTTATGATTGTTGCCGTTTTATCATCTATAGCTATCGTTAGACGAATTCTTATGGCAACATCTGTACTCAAGGCAAGTGTAGCTGCAAAGGTGATTGGAGAAGTTCATGCTCTAATAATATTCCCGATTGTACCATATTTAATCCTCGCAGTCTTTTACATGTTTTGGTTATCGGCTGCTCTTAATCTTTTTAGTTCGGGTCAAATAGTCCGCAATGACTGCAACACAAATTGTTGTGCGTACGATCTTAAAGCCAAACGCGTCAGTTGTGACGATTGTTGCGGTTATAGTATCCATTACACCCCTCACATAGCCGCTTCCATTCTGTTCCACTTGTTCGGATGCTATTGGGCCACTCAGTTTATCATCGCGTGTTCTTCAACCGTGATTGCGGGCTCCGTCGCTTCATACTATTGGGCTCGTGGGGAATCTTCAACGACTATTCCGTTTCTTCCGGTTTTTTCATCAATGAAGCTGCTCATGCGCTATAGCCTTGGCTCGGTGGCTATTGGTTCCTTGATTGTATCGTTTGTTGAGTCGACTCGGTTTATACTCGAGGCTGTTCGCCGGAGACTTAAAGTTGCTGACATCATGCCCGAAAACTGGATTAAAAGAATGTTGTTTTATACTTCGCGGGTTTGCTTGAAATGTATTGAATTGACCGTGAAATCTGTTAACCGCAATGCATACATTATGATTGCTATAACAGGAAAAGGGTTTTTTAAAGCTTCCGAAATGGCAACAGATTTGATAATTAGCAACATTCTCCGTATAGGCCGAGTGAACGTAATCGGGGACGTTATACTCTTTCTCGGAAAACTATGTGTGAGCCTTGCAAGTGCACTTTTTGGATTTCTCATGTTGGATACTCATAAATACAAATCATCTCACAACAAGATCACATCCCCGTTATTTCCGGTGCTGGTGTGTTGGGGTTTAGGATATGTGGTTGCGACCCTTTTCTTTGCAGTGGTGGAAATGTCGATTGATACGATTATACTTTCGTATTGTCAGGATGCGGAGGAACATCAAGGGACCGCACATTATGCGCCTCCGCTTTTGATCGAAACATTTGATGAAGAGGATGAGGTGCAAAGAATTGCACAGTAA 2097 41.34 MRGLMGKYPSSDGNGEVGGANGIIKTNRKCRDVVFLVFFIAFWIAMIVNSSFAFNQGNPLRLNFGLDYKGNVCGGKHKDFNLHELELKYYVNPNQVYQSGLKNSGAKLSNARTICLLDCPTPSEDSLNWVCDYPEGDIRISLDDWIDMNYDYYADLTPELRNSSLQLQGPCYPVIFPSVNVYWTCQFVDRPSNVSLTHWKQLNGLTIDDDMVIDKSIHNSINQRSSVLKRYVADVGKSWPVLIVCGGLLPLGLSLLWLLMIRHFVTAMPWVTVFFFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSIAIVRRILMATSVLKASVAAKVIGEVHALIIFPIVPYLILAVFYMFWLSAALNLFSSGQIVRNDCNTNCCAYDLKAKRVSCDDCCGYSIHYTPHIAASILFHLFGCYWATQFIIACSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAVRRRLKVADIMPENWIKRMLFYTSRVCLKCIELTVKSVNRNAYIMIAITGKGFFKASEMATDLIISNILRIGRVNVIGDVILFLGKLCVSLASALFGFLMLDTHKYKSSHNKITSPLFPVLVCWGLGYVVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDEEDEVQRIAQ 698
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00778 698 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 22 688 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Hetu32g00778 698 Pfam Plasma-membrane choline transporter 326 670 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00778 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
299174 Hetu31g00720 Hetu32g00778
301002 Hetu32g00778 Hetu33g00842
409893 Hetu16g02524 Hetu32g00778
410533 Hetu17g02375 Hetu32g00778
411291 Hetu18g02692 Hetu32g00778
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:34191630 Hetu44g02188 Hetu-Chr44:124412780 dispersed
Hetu Hetu-Chr48:91225469 Hetu32g00778 Hetu-Chr32:34191630 transposed
Hetu Hetu-Chr16:132660553 Hetu32g00778 Hetu-Chr32:34191630 wgd
Hetu Hetu-Chr17:124354572 Hetu32g00778 Hetu-Chr32:34191630 wgd
Hetu Hetu-Chr18:133508640 Hetu32g00778 Hetu-Chr32:34191630 wgd
Hetu Hetu-Chr31:31316913 Hetu32g00778 Hetu-Chr32:34191630 wgd
Hetu Hetu-Chr32:34191630 Hetu33g00842 Hetu-Chr33:34351927 wgd