AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00814 ATGTCTATCTCTAATCACCATCATTCAAATTCCGACGGAAAGCAACGGCGGTTATTTCCGTTTTGGCAATCGTCAACGAATAATCTTCAATTTCAGAGTAACAATAGCAATGAAAACGGTGTCGTATCGACTGGCCGTTCGTCAAATAAGTTGTCATCGGTGGCGAAATCACTTCTGCCAGCTAGACGACGGCTCCGGCTTGATCCGGCGAACAATCTCTACTTTCCTTATGAGCCTGGTAAACAGGTGAGAAGCGCTGTTCGGATCAAGAATCATAGCAGTTCTCATGTTGCTTTTAAGTTTCAAACAACCGCGCCTAAAAGCTGTTATATGCGACCACCAGGTGGTGTCCTGGCTCCTGGGGAAAGCCTCATTGCTACAGTTTTCAAGTTTGTTGAGCAACCAGACAAGAACGAAAAACAATTGGATCAAAGGAGTAAGGTTAAGTTCAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAATTGCTATTTAACCCCTGCTTCTTGCTCTTACAGTTTGATGAACAAAAGGATGAAGTAGTTGTTGAGCGGATTTTGCGTGTTATTTTCTTAAATGCGGATCGCCCTACCCCAGCATTGGAAAAACTGAAACATCAGCTGGCTGAAGCTGAAGCTGAACTAGAATTACGGTTACGGAGAAAACCTGAAGTGGATACTGGTCCAAAAGTTGTGGGCCAAGGGCTTGTTATTGATGAGTGGAAAGAACGAAGGGAGAAATACCTTGCTCGACAACAGGTGGAGGCTGTAGATTTGATGTGA 795 44.28 MSISNHHHSNSDGKQRRLFPFWQSSTNNLQFQSNNSNENGVVSTGRSSNKLSSVAKSLLPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNHSSSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVEQPDKNEKQLDQRSKVKFKIMSLKVKEGTDFVPELLFNPCFLLLQFDEQKDEVVVERILRVIFLNADRPTPALEKLKHQLAEAEAELELRLRRKPEVDTGPKVVGQGLVIDEWKERREKYLARQQVEAVDLM 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00814 264 Gene3D Immunoglobulins 60 198 IPR013783 -
Hetu32g00814 264 SUPERFAMILY PapD-like 54 206 IPR008962 -
Hetu32g00814 264 Coils Coil 205 225 - -
Hetu32g00814 264 ProSiteProfiles Major sperm protein (MSP) domain profile. 64 196 IPR000535 -
Hetu32g00814 264 Pfam MSP (Major sperm protein) domain 65 160 IPR000535 -
Hetu32g00814 264 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 64 253 IPR016763 GO:0005789(PANTHER)|GO:0005789(InterPro)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00814 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299192 Hetu31g00755 Hetu32g00814
301021 Hetu32g00814 Hetu33g00877
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:35628049 Hetu51g02908 Hetu-Chr51:166000070 dispersed
Hetu Hetu-Chr31:32512644 Hetu32g00814 Hetu-Chr32:35628049 wgd
Hetu Hetu-Chr32:35628049 Hetu33g00877 Hetu-Chr33:35777002 wgd