AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00965 ATGGGTTGCAGAGATCCAAAAGAAAAAGAAGAAGAAAGATCGCGAGAATCAAGAAGAAACAAATGGGTTGTAAACGATGCTTTGGTGTTAACAACCATGTGTCTCATTGGTCTCTCTGTCGATGTTCACATCATCGATGGCTCTGTTTATTCTGGAATCTTCCACACTGCCTCTCTTCACCATCATCATCATTACGCTATAGTGTTGAAACGAGCAAAGATGACGAAAAAGGGGAGATGTGATTCAAATGTGGCCAATAAGGATGTAATAGGAACACTTGTAATCCAGTCAGATGATCTTGTTCAAATAGTTGCAAAGGTTTCCAATTGCCACTCTTTTTTGTTTATGAAAGTAGTAATTCCAGCAGATGTTTTTGCCGGTCATGAAGCTGGTGATGATGCAGCGGCTGTTGCAACCTCCGTTCCTTCTAACGGAATTTCATTCGCAGAATTGAATAAAACGACTAGCAAGTCAAATGGTGGTCAACCACATACTAATCAATCAAGAAAGAATGGTGGTCACACTAGTTCATCAGAACAGTTAGTTACTTCGTCAGCACCGAGTGAAACCGTCACTACAAAAATCCCGAAGTCTAATCCAACCGTTAAGGAGTTTAAACTTAACCCTGGAGCAAAAACATTTTCTCCATCATTTCCAAATAAGAAATCACCAACCCCTCCAACGATAGCTACGGGTGCAAATCTTGCATACATTCCCGACAGTTATCCTGGTGGCCCTGTTGTCAGGCCACAGCCTGAAGTTGAAATCAGCCCATTTGCTTCCCATACTCCGCCCGTTAAGTATGTTCCGTATGGAGGCAATGACGTACAACATCTTCCCCCTATTGGTGGATATATGACAAACAGGAGTCAACCGGTTAGATATGGTGTCCCGTATCATCCAGTTCAAACAGCGCCTACTTATGTCCAACCAAGCTCTCAGAATGCAATGGTTGGAAGATTGGGACCCGTTGTCTATGTTCATCCTGTTTCTCAAGTCCCGAACACGAATAGCTTCTCCTCCATTTTAACTCCACACCAAGTACATGTCCCAAAACACCAAGGAACCGTGGCAGCTCAAGCATTGCAGCTACATGTGGCTCCACCGCTTATAGGTGGTGGTCAACCGCCCTTTGTTTTGCCAAGCCATATTCCGGTATCACACCCGACTTACCCCGTGATGCGACCTATCTCGGTCCCTGGATCTAATGGCTTTTTAGTATCAAAGTTTTCTTGA 1236 43.93 MGCRDPKEKEEERSRESRRNKWVVNDALVLTTMCLIGLSVDVHIIDGSVYSGIFHTASLHHHHHYAIVLKRAKMTKKGRCDSNVANKDVIGTLVIQSDDLVQIVAKVSNCHSFLFMKVVIPADVFAGHEAGDDAAAVATSVPSNGISFAELNKTTSKSNGGQPHTNQSRKNGGHTSSSEQLVTSSAPSETVTTKIPKSNPTVKEFKLNPGAKTFSPSFPNKKSPTPPTIATGANLAYIPDSYPGGPVVRPQPEVEISPFASHTPPVKYVPYGGNDVQHLPPIGGYMTNRSQPVRYGVPYHPVQTAPTYVQPSSQNAMVGRLGPVVYVHPVSQVPNTNSFSSILTPHQVHVPKHQGTVAAQALQLHVAPPLIGGGQPPFVLPSHIPVSHPTYPVMRPISVPGSNGFLVSKFS 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00965 411 Pfam Ataxin 2 SM domain 25 106 IPR025852 -
Hetu32g00965 411 PANTHER ATAXIN 2-RELATED 15 106 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Hetu32g00965 411 MobiDBLite consensus disorder prediction 153 199 - -
Hetu32g00965 411 MobiDBLite consensus disorder prediction 213 227 - -
Hetu32g00965 411 MobiDBLite consensus disorder prediction 153 227 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00965 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299233 Hetu31g00908 Hetu32g00965
301062 Hetu32g00965 Hetu33g01017
409872 Hetu16g02471 Hetu32g00965
410513 Hetu17g02325 Hetu32g00965
411265 Hetu18g02613 Hetu32g00965
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3366663 Hetu Hetu32g00965 Hetu-Chr32:44612856 Hetu41g03386 Hetu-Chr41:158686258
3566110 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu32g00965 Hetu-Chr32:44612856
3570616 Hetu Hetu17g02325 Hetu-Chr17:120464847 Hetu32g00965 Hetu-Chr32:44612856
3572899 Hetu Hetu18g02613 Hetu-Chr18:127850673 Hetu32g00965 Hetu-Chr32:44612856
3624437 Hetu Hetu31g00908 Hetu-Chr31:40841874 Hetu32g00965 Hetu-Chr32:44612856
3628510 Hetu Hetu32g00965 Hetu-Chr32:44612856 Hetu33g01017 Hetu-Chr33:43292406