AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu32g00968 | ATGTTGGCAAAGACATATCATCACACCTTCTTTGAAATGCTCGGTAATTGGTCATTTGGTGATTACTTTAAAGAAGAAGCCATCGGTTGGGCTTGGGAACTTCTCACAGCGGTTTATAAACTACCTACTGATCGGATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCCGCTGATACTGAAGCTAGAGATATATGGCTCAAATATTTACCATCTGCACGGGTTCTGCCATTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACCGGACCTTGTGGGCCCTGTACTGAAATACACTTTGATAGAGTCGGTGGCCGTGACGCTGCTGATTTGGTTAATAACGATGACCCTACATTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCTGACGGTTCTTTAAAACCTCTGCCCGCCAAACACGTGGATACTGGAATGGGTTTCGAAAGATTAACGTCAATTCTTCAGAACAAAATGAGCAACTATGATACAGATGTTTTCATACCTATATTTGATGCTATCCAGGCGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTCGATGGGATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATCGCAGACGGTTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGGACTGAAGTACTGAAAGCACAACAAGGATTTTTCAACGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCCGAGCTAAAACAACAAGAGGAGCGCATTAAAGAGATTATAGCTGAAGAGGAAGCAAGTTTCGGGAGAACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACAGCTCAAGATGTTCAAGGAAAGATATTTAGTGGACAGGATGCGTTTGTTTTGTGGGATACCTATGGATTCCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTAGTTGATGTTGAGGGCTTTAATATCGCTATGAATGAAGCTAGAGAACGATCAAGAAACGCCCAAAATAAGCAAGCTGCTGTTACAATCGTCATGGACGCAGATGCCACCTCAGCACTTCATAAGAGAGGCGTGGCTACAACAAACGACAGTTTCAAGTTTACATGGTTTAAGGTATGTAGACACGCCAGTTCTGACCACAAAAGTGTGATAAAAGCCATTTACACAGGCTCCGAATATGTGGACCGTGCTGATGCTGGCGATGACGTCGGCATAATTCTCGAGAGCACTAGTTTTTATGCGGAGCAAGGTGGTCAGATATATGATACTGGACTACTTGGAGGCCCTTCTGGATCATTTGAAGTCTGTAACGTTCAAATTTACGGTGGTTTTGTTCTTCATCTTGGTAAAATTAGTGGGGAGTCGGCTCGGTTTAATGTCGGTGATGAAGTAATTTGTAAGGTGGACTACGAAAGGCGTCAACGCATTGCTCCTAATCATACTTGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGAGTCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCACGGGAAACCCGTAAAGCCCGAAGACCTTCGTAGAATTGAATCAATCGTGAATGAACAAATTAAAGCTGAGCTGGAGGTTTCTGCAAAGGAGGCAAGCCTTGCTGATGCAAAACGAGTAAACGGTTTGCGTGCTGTTTTCGGTGAAGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGCCGACAAGTGGACGAATTATTGGCTGATCCTGAAAATGAACAATGGTCGTCGATATCTGCAGAACTTTGTGGCGGGACCCATATTTCAAATACACGCGAGGCGAAAGCCTTTGCACTTTTGTCTGAAGAGGGAATTGCTAAGGGGATTAGAAGAGTTACTGCCGTAACAACCGACTATGCTTTTGAAGCTATTAAAAAGGCGTCTGAGCTTGAGCTGGAAGTTGATCTCGCATCTAAACTGGAAGGAAGCCTGCTTGAACAGAAAGTGACATCATTAAATGGTCAAGTAGAGTCTGCCTCGATTCCAACCGCAAAGAAGGCTGATCTTAAGGCAAAAATCTCCATCCTTCAGAATCAAGTAATAAAGGCAAAAAAGAAGACTGCTGAAGAGAACATACGGAAAGCTGTTGAAGCTGCTACTAAGGCAGCAGAAGTTGCATCTTCTGAGGGGAAATCCTTCTGTATTTCACAAGTTGGTGTAGGGTCAGACACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAAAAGGGAATGGCGGTGATGGTTTTTACCACCGATGAACAATCAAAGAAGGCACTAGTTTGTGCGGGTGTGCCAGAAAAAAGCGATAAAAGCAACCAATTGAAGGTTTTAGATTGGCTCAAGGCTGCACTGAAGCCGCTAGAAGGCAAAGGCGGTGGTGGGAAAGGCGGTCTTGCTCAAGGCCAGGGGCCCGATATAAAACACGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCGGCGCTTAAACTGGGCTGA | 2610 | 44.21 | MLAKTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTAVYKLPTDRIYATYFGGDEKLGLPADTEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQAATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEERIKEIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNIAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVATTNDSFKFTWFKVCRHASSDHKSVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIYDTGLLGGPSGSFEVCNVQIYGGFVLHLGKISGESARFNVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGSHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVAIGRQVDELLADPENEQWSSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDLASKLEGSLLEQKVTSLNGQVESASIPTAKKADLKAKISILQNQVIKAKKKTAEENIRKAVEAATKAAEVASSEGKSFCISQVGVGSDTAAIREAVVKVMEQKGMAVMVFTTDEQSKKALVCAGVPEKSDKSNQLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG | 869 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu32g00968 | 869 | Gene3D | - | 501 | 677 | - | - | |
| Hetu32g00968 | 869 | PRINTS | Alanyl-tRNA synthetase signature | 151 | 164 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Hetu32g00968 | 869 | PRINTS | Alanyl-tRNA synthetase signature | 232 | 245 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Hetu32g00968 | 869 | PRINTS | Alanyl-tRNA synthetase signature | 124 | 135 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Hetu32g00968 | 869 | PRINTS | Alanyl-tRNA synthetase signature | 208 | 224 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Hetu32g00968 | 869 | NCBIfam | alanine--tRNA ligase | 5 | 847 | IPR002318 | GO:0000166(InterPro)|GO:0005737(InterPro) | |
| Hetu32g00968 | 869 | Coils | Coil | 714 | 746 | - | - | |
| Hetu32g00968 | 869 | SMART | tRNA-SAD-4 | 602 | 661 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Hetu32g00968 | 869 | Coils | Coil | 349 | 369 | - | - | |
| Hetu32g00968 | 869 | FunFam | Alanine--tRNA ligase | 756 | 864 | - | - | |
| Hetu32g00968 | 869 | CDD | AlaRS-core | 5 | 166 | - | - | |
| Hetu32g00968 | 869 | SUPERFAMILY | Translation proteins | 431 | 500 | IPR009000 | - | |
| Hetu32g00968 | 869 | SUPERFAMILY | Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 171 | 371 | IPR018162 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro) | |
| Hetu32g00968 | 869 | Pfam | Threonyl and Alanyl tRNA synthetase second additional domain | 602 | 660 | IPR012947 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro) | |
| Hetu32g00968 | 869 | Pfam | tRNA synthetases class II (A) | 5 | 504 | IPR018164 | GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Hetu32g00968 | 869 | FunFam | Alanine--tRNA ligase, cytoplasmic | 2 | 167 | - | - | |
| Hetu32g00968 | 869 | PANTHER | ALANYL-TRNA SYNTHETASE | 5 | 865 | IPR050058 | GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER) | |
| Hetu32g00968 | 869 | SUPERFAMILY | ThrRS-AlaRS common domain | 500 | 671 | IPR018163 | GO:0000166(InterPro) | |
| Hetu32g00968 | 869 | FunFam | Alanine--tRNA ligase, cytoplasmic | 501 | 676 | - | - | |
| Hetu32g00968 | 869 | Pfam | DHHA1 domain | 717 | 863 | IPR003156 | GO:0003676(InterPro) | |
| Hetu32g00968 | 869 | Hamap | Alanine--tRNA ligase [alaS]. | 1 | 868 | IPR023033 | GO:0004813(InterPro) | |
| Hetu32g00968 | 869 | Gene3D | - | 755 | 864 | - | - | |
| Hetu32g00968 | 869 | SUPERFAMILY | Class II aaRS and biotin synthetases | 5 | 170 | IPR045864 | - | |
| Hetu32g00968 | 869 | ProSiteProfiles | Alanyl-transfer RNA synthetases family profile. | 1 | 674 | IPR018165 | GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro) | |
| Hetu32g00968 | 869 | Gene3D | Bira Bifunctional Protein; Domain 2 | 1 | 167 | IPR045864 | - | |
| Hetu32g00968 | 869 | Gene3D | - | 427 | 500 | - | - | |
| Hetu32g00968 | 869 | FunFam | Alanine--tRNA ligase | 392 | 499 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu32g00968 | K01872 | alanyl-tRNA synthetase [EC:6.1.1.7] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 299235 | Hetu31g00910 | Hetu32g00968 | |
| 301064 | Hetu32g00968 | Hetu33g01019 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 3363339 | Hetu | Hetu31g00910 | Hetu-Chr31:40886080 | Hetu32g00968 | Hetu-Chr32:44668499 | |
| 3366664 | Hetu | Hetu32g00968 | Hetu-Chr32:44668499 | Hetu50g02315 | Hetu-Chr50:125386885 | |
| 3485867 | Hetu | Hetu32g00968 | Hetu-Chr32:44668499 | Hetu33g01019 | Hetu-Chr33:43367800 |