AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g00978 ATGGCCAAAAGTTCCTTCAAACTGGAACACCCACTAGAGAGGCGCCAAGCCGAGGCTGCACGGATCAGGGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAGAAGGCTGAAAGAAGCGACATACCCGACATAGACAAGAAGAAATATCTGGTCCCTGCTGATCTGACCGTTGGACAGTTTGTTTATGTGGTGAGGAAGAGGATTAAACTGAGTGCTGAAAAAGCCATCTTTATCTTTGTGAAGAACATTCTGCCACCTACTGCTGCCATGATGTCTGCCATCTATGAAGAAAACAAAGACGAGGATGGTTTCCTGTACATGACTTACAGTGGGGAGAACACGTTTGGAGCATGTTGA 360 46.67 MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g00978 119 FunFam Autophagy-related protein 1 117 - -
Hetu32g00978 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 GO:0006995(PANTHER)
Hetu32g00978 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Hetu32g00978 119 CDD Ubl-ATG8 12 114 - -
Hetu32g00978 119 Gene3D - 1 118 - -
Hetu32g00978 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g00978 K08341 GABA(A) receptor-associated protein
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
105603 Hetu13g00081 Hetu32g00978
105606 Hetu13g00091 Hetu32g00978
106232 Hetu15g00134 Hetu32g00978
299241 Hetu31g00930 Hetu32g00978
301070 Hetu32g00978 Hetu33g01043
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:45239997 Hetu34g01720 Hetu-Chr34:128767893 dispersed
Hetu Hetu-Chr31:41477465 Hetu32g00978 Hetu-Chr32:45239997 wgd
Hetu Hetu-Chr32:45239997 Hetu33g01043 Hetu-Chr33:44134285 wgd