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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g01164 ATGGAAGGTCCTGAGGATGCTTTAGATGAATTTGACTCGCATAATGGTGAATATGAAATTAAACGTCTAGCGGTTGAACCGCATAATGGTGAATATGAAATTAAACGTCTTGCGGTTGAACCGCATAATGGTGAATATGAAATTAAACATCTAGCGGTTGAACCTAGTAAAAGTAAAGAAGAAGCCGAGAAGACAGCGATTAGATTGCTTGCAGTAAGAGCATATACAGCACTTGAGCTGAAGAAGAAACTTTCTGGAAAGAAATTCTCCCCTGAAGTTGTCACTGCTGTGATCTCTGACTTCCAGAACAGGGGTTTGATAAATGATTTGTTGTATGCTGAAGCGTTTTCTCGATCAAGATGGTCTTTATCAAGTTGGGGTCCACATAGAATCAAGCAAGCCCTGGCCAAAAAGGGTGTAAATGATGTTGATGCACAGAAAGCAATAAAATTGGTTTTAGAAGACGGTGAACCCGTCGATGATGATCAAGTTTCAAGATTTGGATTATCAAAGTCCTCGTTTGACCATTTGTTTGCACAAGCTTCAAAGCAATGGATTCGTGCTAAGGATCTCCCCAGTGAAAGACAGAAATCGAGAATCATCGCGTGGCTTCAATACCGTGGCTTTAATTGGGGAGTTATTAACTTTATCTTGAAAAGGTTACAATCCGAGCATCCGCCTTAA 684 40.35 MEGPEDALDEFDSHNGEYEIKRLAVEPHNGEYEIKRLAVEPHNGEYEIKHLAVEPSKSKEEAEKTAIRLLAVRAYTALELKKKLSGKKFSPEVVTAVISDFQNRGLINDLLYAEAFSRSRWSLSSWGPHRIKQALAKKGVNDVDAQKAIKLVLEDGEPVDDDQVSRFGLSKSSFDHLFAQASKQWIRAKDLPSERQKSRIIAWLQYRGFNWGVINFILKRLQSEHPP 227
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g01164 227 PANTHER REGULATORY PROTEIN RECX FAMILY PROTEIN 2 226 IPR003783 GO:0006282(InterPro)
Hetu32g01164 227 Hamap Regulatory protein RecX [recX]. 44 225 IPR003783 GO:0006282(InterPro)
Hetu32g01164 227 Pfam RecX, second three-helix domain 108 148 IPR053924 -
Hetu32g01164 227 Gene3D - 171 226 IPR036388 -
Hetu32g01164 227 Gene3D - 61 106 IPR036388 -
Hetu32g01164 227 Gene3D - 108 151 IPR036388 -
Hetu32g01164 227 Pfam RecX, third three-helix domain 174 218 IPR053925 -
Hetu32g01164 227 Pfam RecX, first three-helix domain 65 99 IPR053926 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g01164 K03565 regulatory protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
301115 Hetu32g01164 Hetu33g01234
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:55751881 Hetu41g02463 Hetu-Chr41:94706210 dispersed
Hetu Hetu-Chr32:55751881 Hetu33g01234 Hetu-Chr33:54831096 wgd