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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu32g01259 ATGTTTAATCAAACTACTTCATCATTCCTCACAAACACCACCCAGGATCTCACAACAAACAACATGTTATGCCTGTCAAAAAATGTGATGAGCACGAAGAAGCTCCGAACACCTTCGGAAGTCGTTCGAAAGACTCGATCCCTTCTTCTTTACTCCAAGAACTCTCTTGATGTCGGCTCGCAGTCTACAAAACTGAGCTCATTAATAAGGGAACTAAAGTTGATTCTTTACGGAGATGATTACTCTGAGCCTTCTACTGAAGCCTGTGCACAATTAACTGTGGAGTTCTTTAAAGAAGACACGTTGCGTCTACTCATCATCTTTCTTCCCAAGTTGAACTTGGAGGCCCGTAAAGATGCCACACAAGTCGTTGCGAGTCTGCAAAGGCAACCTTTGCCATCACGCTTCGAGGTTTCGAGATATTTGGAAGCTAATCTTGATCTTTTAGACATTCTCATATCAGGGTATGAGGATCCTCAATTGGCTCTTCATTATGGTAGGATGTTGAAGGAGTGCCTACGTCATCAAATTGTTGCAAGTTACTTACTAGAACCGAATCAACTCAAGAAACTTTTTGGTTACATACAACATCCAAGTTTTGATATTGCTGCAGATGCAGCAGATGCATTCAAAGATCTTTTAACTAGACATAAGTCTACTGTGTCTGAATCCTTGTCCAAAAACTATTGTTGGGTAGACATTCGTTATTTTTTTACTGAAATGAACGAAAAGCTACTGAAATCTGAAAACTACATCACCAGAAGACAAGCTGTTAAGCTACTCGGATGCATATTGCTTGATCGTTCGAATTCTTGTGTTATGACACGATATGTGAGCTCAAAAGATAACCTGATAATTCTAATGAATCTTCTAAGGGATCAAAGTAAGAATATCCAGATAGATGCTTTTCATGTGTTTAAGCTATTTGTAGCAAATGAAAATAAGCCTCCTGAAATAGTGAGCATACTTGTTACAAACCGAAGCAAGCTTCTACGTTTACTTAGCGCTTTCGTCTATACAGATGATGAAGTGTTTGAGACAGACAAAATTCAGGTGGTAAATAAACTGGCTGTGCTGGAGCTTCAAGACTAA 1092 39.19 MFNQTTSSFLTNTTQDLTTNNMLCLSKNVMSTKKLRTPSEVVRKTRSLLLYSKNSLDVGSQSTKLSSLIRELKLILYGDDYSEPSTEACAQLTVEFFKEDTLRLLIIFLPKLNLEARKDATQVVASLQRQPLPSRFEVSRYLEANLDLLDILISGYEDPQLALHYGRMLKECLRHQIVASYLLEPNQLKKLFGYIQHPSFDIAADAADAFKDLLTRHKSTVSESLSKNYCWVDIRYFFTEMNEKLLKSENYITRRQAVKLLGCILLDRSNSCVMTRYVSSKDNLIILMNLLRDQSKNIQIDAFHVFKLFVANENKPPEIVSILVTNRSKLLRLLSAFVYTDDEVFETDKIQVVNKLAVLELQD 363
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu32g01259 363 SUPERFAMILY ARM repeat 36 356 IPR016024 -
Hetu32g01259 363 Pfam Mo25-like 33 359 IPR013878 -
Hetu32g01259 363 Gene3D - 34 360 IPR011989 -
Hetu32g01259 363 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 32 360 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu32g01259 K08272 calcium binding protein 39
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Event-related genes

Select Gene_1 Gene_2 Event_name
299307 Hetu31g01209 Hetu32g01259
301147 Hetu32g01259 Hetu33g01354
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:60843320 Hetu9g01756 Hetu-Chr9:73317244 dispersed
Hetu Hetu-Chr31:57362806 Hetu32g01259 Hetu-Chr32:60843320 wgd
Hetu Hetu-Chr32:60843320 Hetu33g01354 Hetu-Chr33:62874342 wgd