AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu32g02144 | ATGGATATGGATTCAGTTAAGCTATGGCCTCCTAGCCACAGCACGAGGCTAATACTCGTGGAGCGAATCATAAAAAACCTTTCAACTCCGTCCATTATATCACGAAAATACGGGCTTTTAAGTAAAGAAGAAGCAGAGGAAGATGCCAAACAAATTGAATCTGCAGCCTTTGTGGCTGCAACCCAACACTTTGAAAAAGAGCCCGAGAGTGATGGAGGATCTGCAGTCCAAGTTTATGCGAAAGAATCCAGTAAACTAATGGTAGAGTTTCTCAAAACCGGGCCCAAACACAAAGAAGACCGAGACACTTTACCAGGGTTAACTACATCAAACCATGAACACGTGTTTGATATTTCTGGAGGGCGTCGAGCCTTCATTGATGCAGAAGAGGCTAAAGAGCTGCTAAAACCATTAAAAGAGCCGGGAAACAAATTCACAAAAATTCGCTTTAGCAATAGAAGTTTCGGGCTACCGGCAGCCCATGTTGCTGCAACGGTCTTGTCATCTGTTAAAGATCAGTTGACCGAAGTTGACTTATCGGATATTGTTTCTAGGAGGCCTGAGCCTGAGGCTATTGGGGTTATGCAGATGTTTTCATCAGCACTTGAGGGTGCTCAGTTGAGTGCTTTAAATTTATCGAATAATGCTTTGGGCGAGAAGGGGGTTCGGGCTTTTGGGGCTCTTTTGAAGTCTCAAGGTAGTCTTGTTGAGCTAAGTTTTATGAATGCTGGGATCTCACATGAAGCTGCAAAGGCGGTTTGCGAGTTGATTCCTTCGACAAGTAAACTTAAGATTCTTCAGTTTCATCATAACATGATGGGAGATGAAGGTGCGATCGCCATTGCTCAACTTGTCAAAGGATCTCCAAATCTAGAGGATTTCAGGTGTTCCTCCACAAGAATTGGGTCAGCAGGGGGGGTTGCACTAGCTGAAGCACTTAAAACATGTACCCTTCTGAAGAAACTGGACTTACGCGACAACATGTTTGGACCAAAACCGGGGGTTTCATTGGGTAACGCTCTTCACGCAAATCTTACAGAAATCTACCTCAGTTACTTGAACTTGGAAAATGAAGGAAGCATAACCCTTGCAAATGCACTAAAACAATCCAAATCTGCCCTCGAGATCATAGAGATGGCTGCAAACAACATCACTTCAGAAGCAGCAGCCAAAGCATTGGCTGACTGCATCATCTCAAACAAACATTCTCTGACCCGAATAAACTTGTCTGAAAATGAAATAAAAGATGCGGGCGCTGTAGTGATTGCCAAAGCACTTGAAGACGCATTTGAGCGATTGTGTGTGGTTGATCTGAGCACCAATGGGATTGAAACAGGTGGAGCTATGGCATTGGCTAAAGCGGTTGTGGGGAAGCCGGGATTTAGGCTACTAAACATTAATGGCAACTTTTTATCTTCTAAAGGCATTCAGGGTGTTAGAGAGATATTTAAGGATTTCCCTCGTATGCTTGGACCGCTCGATGAGAATGATCCTCGTGGGGACGAATTCGATGAACTTGAATCGAAGCTCAAGGACCTTGAAATGAAGCAGAAAGAATAA | 1560 | 43.97 | MDMDSVKLWPPSHSTRLILVERIIKNLSTPSIISRKYGLLSKEEAEEDAKQIESAAFVAATQHFEKEPESDGGSAVQVYAKESSKLMVEFLKTGPKHKEDRDTLPGLTTSNHEHVFDISGGRRAFIDAEEAKELLKPLKEPGNKFTKIRFSNRSFGLPAAHVAATVLSSVKDQLTEVDLSDIVSRRPEPEAIGVMQMFSSALEGAQLSALNLSNNALGEKGVRAFGALLKSQGSLVELSFMNAGISHEAAKAVCELIPSTSKLKILQFHHNMMGDEGAIAIAQLVKGSPNLEDFRCSSTRIGSAGGVALAEALKTCTLLKKLDLRDNMFGPKPGVSLGNALHANLTEIYLSYLNLENEGSITLANALKQSKSALEIIEMAANNITSEAAAKALADCIISNKHSLTRINLSENEIKDAGAVVIAKALEDAFERLCVVDLSTNGIETGGAMALAKAVVGKPGFRLLNINGNFLSSKGIQGVREIFKDFPRMLGPLDENDPRGDEFDELESKLKDLEMKQKE | 519 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu32g02144 | 519 | Gene3D | Ribonuclease Inhibitor | 104 | 514 | IPR032675 | - | |
| Hetu32g02144 | 519 | Pfam | WPP domain | 5 | 100 | IPR025265 | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 260 | 287 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 316 | 343 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 430 | 457 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 232 | 259 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 204 | 231 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 344 | 369 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 288 | 315 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 371 | 399 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 401 | 428 | - | - | |
| Hetu32g02144 | 519 | SMART | LRR-RI-2 | 458 | 485 | - | - | |
| Hetu32g02144 | 519 | SUPERFAMILY | RNI-like | 115 | 503 | - | - | |
| Hetu32g02144 | 519 | Pfam | Leucine Rich repeat | 401 | 423 | IPR001611 | GO:0005515(InterPro) | |
| Hetu32g02144 | 519 | Pfam | Leucine Rich repeat | 262 | 282 | IPR001611 | GO:0005515(InterPro) | |
| Hetu32g02144 | 519 | Pfam | Leucine Rich repeat | 207 | 225 | IPR001611 | GO:0005515(InterPro) | |
| Hetu32g02144 | 519 | PANTHER | RAN GTPASE-ACTIVATING PROTEIN 1 | 4 | 518 | IPR045203 | GO:0005096(InterPro) | |
| Hetu32g02144 | 519 | Gene3D | WPP domain | 5 | 103 | IPR038214 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu32g02144 | K14319 | Ran GTPase-activating protein 1 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 299528 | Hetu31g02127 | Hetu32g02144 | |
| 301176 | Hetu32g02144 | Hetu33g02075 | |
| 411806 | Hetu1g00232 | Hetu32g02144 | |
| 415591 | Hetu2g00257 | Hetu32g02144 | |
| 416390 | Hetu32g02144 | Hetu3g00225 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr32:123472382 | Hetu33g02076 | Hetu-Chr33:116221469 | dispersed | |
| Hetu | Hetu-Chr1:9221097 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr10:68488363 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr11:65994777 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr12:59909829 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr2:9283554 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr3:9427453 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr31:121609751 | Hetu32g02144 | Hetu-Chr32:123472382 | wgd | |
| Hetu | Hetu-Chr32:123472382 | Hetu33g02075 | Hetu-Chr33:116166261 | wgd |