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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00594 ATGCTCCATCACATCCCACTTCCCCAAATTCAAAACATCATGTCTCTGACACCCACTGATCAAGATCAGATCACAAACACAGGTGAACTTCATGTCATTGTGGGCCCAATGTTTGCCGGTAAAACCACTGCCCTTCTTCGCAGGATCAAATCTGAAGCCACCAATGGCAGGAATATAGCAATGATAAAGTCAAACAAGGATACCCGATACGCGATAGATTCGGTTGTGACCCATGATGGAACAAAGTATCCATGTTGGGCACTGCCTGATTTGTTGTCTTTTAAACAGAAGCTTGGAGAAGAAGCTTATGGAAAGGTGGATGTAATTGGAATTGATGAAGCACAGTTCTTCGATGATCTTTACGAGTTTTGTTGTAAAGCTGCAGATCATGATGGGAAAACTGTTGTCGTTGCTGGTCTTGATGGCGATTATTTAAGACGAAACTTTGGTCCGGTGCTTGATATAGTACCTCTTGCTGATACGGTAACTAAATTAACCGCCAGATGTGAATTATGCGGCAAAAAGGCCCATTTCACTTTCAGGAAGACTAACGAGACGAAAACTGAACTTATTGGTGGAGCGGATGTGTATATGCCTGTTTGCCGTCAACATTATGTTAACGGGCATATCGTGAAGAAACCCATTGTTTAA 651 42.55 MLHHIPLPQIQNIMSLTPTDQDQITNTGELHVIVGPMFAGKTTALLRRIKSEATNGRNIAMIKSNKDTRYAIDSVVTHDGTKYPCWALPDLLSFKQKLGEEAYGKVDVIGIDEAQFFDDLYEFCCKAADHDGKTVVVAGLDGDYLRRNFGPVLDIVPLADTVTKLTARCELCGKKAHFTFRKTNETKTELIGGADVYMPVCRQHYVNGHIVKKPIV 216
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00594 216 PANTHER THYMIDINE KINASE 23 213 IPR001267 GO:0004797(InterPro)|GO:0004797(PANTHER)|GO:0005524(InterPro)|GO:0046104(PANTHER)
Hetu33g00594 216 FunFam Thymidine kinase 24 165 - -
Hetu33g00594 216 Gene3D - 166 207 - -
Hetu33g00594 216 FunFam Thymidine kinase 166 208 - -
Hetu33g00594 216 ProSitePatterns Thymidine kinase cellular-type signature. 192 205 IPR020633 GO:0004797(InterPro)|GO:0005524(InterPro)
Hetu33g00594 216 PIRSF Tdk 25 214 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Hetu33g00594 216 Pfam Thymidine kinase 28 205 IPR001267 GO:0004797(InterPro)|GO:0005524(InterPro)
Hetu33g00594 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 208 - -
Hetu33g00594 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 166 IPR027417 -
Hetu33g00594 216 Gene3D - 21 165 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00594 K00857 thymidine kinase [EC:2.7.1.21]
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Event-related genes

Select Gene_1 Gene_2 Event_name
299924 Hetu31g00448 Hetu33g00594
300929 Hetu32g00500 Hetu33g00594
405284 Hetu10g00219 Hetu33g00594
406294 Hetu11g00203 Hetu33g00594
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:18871662 Hetu32g02425 Hetu-Chr32:142647627 dispersed
Hetu Hetu-Chr10:9400647 Hetu33g00594 Hetu-Chr33:18871662 wgd
Hetu Hetu-Chr11:7260495 Hetu33g00594 Hetu-Chr33:18871662 wgd
Hetu Hetu-Chr11:10279019 Hetu33g00594 Hetu-Chr33:18871662 wgd
Hetu Hetu-Chr31:14901325 Hetu33g00594 Hetu-Chr33:18871662 wgd
Hetu Hetu-Chr32:19233564 Hetu33g00594 Hetu-Chr33:18871662 wgd