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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00617 ATGGCGGATTCCGACAACGAATCCGGCGGTCAGAACGCCGGCAGCGGCGAGTTATCGGCGAGAGAACAGGACCGGTTCCTGCCGATTGCTAACGTGAGCCGGATCATGAAAAAGGCGTTACCGGCGAACGCGAAGATCTCGAAGGACGCAAAAGAGACGGTGCAGGAGTGTGTGTCGGAGTTTATCAGTTTTATCACCGGAGAAGCCTCGGATAAGTGTCAGAGAGAGAAGCGGAAGACGATCAATGGTGACGATTTGCTGTGGGCGATGACGACGTTAGGGTTTGAAGAGTATGTTGAGCCGTTGAAGGTGTATTTAGCCAAGTATAGAGAGATGGAAGGGGAGAAGACGACGGTTGGGAGGCACGGTGAGAAGGATGGATCGTCTGGCGGTGGTGGTGGCGCCGCCGCGGGCGGCGGAGGGAGTGGTGGCGGTGTGAATTCGAGCGGTTATAGTGACGTCAGTGGTGGTGGAATGTACGGAGGGTTGCAGAGTAACATGATGATGCCACGTCATCACCAGATGTATAATTCCGGTCCGTATATGGGCAGATCGGGTAGCATCGGCGGTTGCTAA 576 55.21 MADSDNESGGQNAGSGELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLAKYREMEGEKTTVGRHGEKDGSSGGGGGAAAGGGGSGGGVNSSGYSDVSGGGMYGGLQSNMMMPRHHQMYNSGPYMGRSGSIGGC 191
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00617 191 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982(InterPro)
Hetu33g00617 191 ProSitePatterns NF-YB-HAP3 subunit signature. 57 73 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hetu33g00617 191 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 149 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Hetu33g00617 191 MobiDBLite consensus disorder prediction 1 22 - -
Hetu33g00617 191 MobiDBLite consensus disorder prediction 115 144 - -
Hetu33g00617 191 Pfam Histone-like transcription factor (CBF-NF-Y) and archaeal histone 26 90 IPR003958 -
Hetu33g00617 191 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Hetu33g00617 191 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Hetu33g00617 191 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Hetu33g00617 191 MobiDBLite consensus disorder prediction 1 18 - -
Hetu33g00617 191 FunFam Nuclear transcription factor Y subunit B-3 15 136 - -
Hetu33g00617 191 SUPERFAMILY Histone-fold 23 129 IPR009072 GO:0046982(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00617 K08065 nuclear transcription Y subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr32:62182546 Hetu33g00617 Hetu-Chr33:20308382 dispersed
Hetu Hetu-Chr32:62189162 Hetu33g00617 Hetu-Chr33:20308382 dispersed
Hetu Hetu-Chr33:20308382 Hetu33g01390 Hetu-Chr33:64104058 dispersed
Hetu Hetu-Chr10:9693066 Hetu33g00617 Hetu-Chr33:20308382 wgd
Hetu Hetu-Chr11:7595413 Hetu33g00617 Hetu-Chr33:20308382 wgd
Hetu Hetu-Chr12:8017592 Hetu33g00617 Hetu-Chr33:20308382 wgd
Hetu Hetu-Chr31:15800029 Hetu33g00617 Hetu-Chr33:20308382 wgd
Hetu Hetu-Chr32:20652149 Hetu33g00617 Hetu-Chr33:20308382 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hetu2g02907 . 1 173 CCAAT-HAP3 Transcription Factor family AT2G37060 75.419 1.98e-88 255.0
Hetu9g02614 . 48 147 CCAAT-HAP3 Transcription Factor family AT2G47810 68.0 5.24e-50 154.0
Hetu10g00235 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 4.09e-75 221.0
Hetu10g00236 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 2.87e-75 221.0
Hetu11g00218 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 3.38e-75 221.0
Hetu11g00219 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 2.87e-75 221.0
Hetu11g00992 . 50 188 CCAAT-HAP3 Transcription Factor family AT5G47670 63.636 1.07e-59 184.0
Hetu12g00215 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 3.38e-75 221.0
Hetu12g00216 . 1 124 CCAAT-HAP3 Transcription Factor family AT4G14540 85.714 2.87e-75 221.0
Hetu12g00901 . 50 188 CCAAT-HAP3 Transcription Factor family AT5G47670 63.636 8.63e-60 184.0
Hetu16g00826 . 67 114 CCAAT-HAP3 Transcription Factor family AT4G14540 70.833 1.20e-18 73.6
Hetu20g01033 . 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 72.072 1.85e-56 171.0
Hetu21g00997 . 51 157 CCAAT-HAP3 Transcription Factor family AT2G47810 72.072 1.85e-56 171.0
Hetu22g02938 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 88.71 5.87e-76 223.0
Hetu23g02924 . 1 123 CCAAT-HAP3 Transcription Factor family AT4G14540 88.71 5.87e-76 223.0
Hetu24g03239 . 1 159 CCAAT-HAP3 Transcription Factor family AT4G14540 71.875 5.20e-76 223.0
Hetu25g02408 . 19 164 CCAAT-HAP3 Transcription Factor family AT3G53340 61.667 7.89e-70 209.0
Hetu26g02574 . 19 164 CCAAT-HAP3 Transcription Factor family AT3G53340 75.0 1.42e-78 229.0
Hetu27g02601 . 19 164 CCAAT-HAP3 Transcription Factor family AT3G53340 68.098 1.79e-74 220.0
Hetu28g01815 . 35 110 CCAAT-HAP3 Transcription Factor family AT1G09030 55.263 1.32e-25 94.4
Hetu31g00464 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 86.614 3.85e-76 224.0
Hetu31g01241 . 1 125 CCAAT-HAP3 Transcription Factor family AT4G14540 77.6 1.47e-67 200.0
Hetu32g00527 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.402 8.31e-77 225.0
Hetu32g01291 . 1 125 CCAAT-HAP3 Transcription Factor family AT4G14540 78.4 2.74e-68 202.0
Hetu32g01293 . 35 110 CCAAT-HAP3 Transcription Factor family AT2G38880 52.632 1.70e-25 92.4
Hetu33g00617 . 1 126 CCAAT-HAP3 Transcription Factor family AT4G14540 87.402 8.88e-77 225.0
Hetu33g01390 . 1 125 CCAAT-HAP3 Transcription Factor family AT4G14540 77.6 1.66e-67 200.0
Hetu38g02679 . 1 120 CCAAT-HAP3 Transcription Factor family AT2G37060 87.5 1.13e-72 216.0
Hetu38g02680 . 118 164 CCAAT-HAP3 Transcription Factor family AT3G53340 51.923 1.94e-07 45.4
Hetu39g02427 . 118 164 CCAAT-HAP3 Transcription Factor family AT3G53340 51.923 2.36e-07 44.3
Hetu39g02428 . 1 120 CCAAT-HAP3 Transcription Factor family AT2G37060 87.5 2.17e-73 216.0
Hetu40g02187 . 6 108 CCAAT-HAP3 Transcription Factor family AT4G14540 75.238 7.86e-54 167.0
Hetu40g03022 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.791 8.10e-63 192.0
Hetu41g00713 . 13 165 CCAAT-HAP3 Transcription Factor family AT2G37060 53.431 2.18e-64 198.0
Hetu41g02337 . 6 108 CCAAT-HAP3 Transcription Factor family AT4G14540 75.238 1.27e-53 166.0
Hetu41g02576 HSH 26 106 CCAAT-HAP3 Transcription Factor family AT4G14540 31.034 2.55e-10 54.3
Hetu41g03018 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.791 9.17e-63 192.0
Hetu42g00445 . 13 165 CCAAT-HAP3 Transcription Factor family AT2G37060 69.427 9.19e-71 214.0
Hetu42g02085 . 6 108 CCAAT-HAP3 Transcription Factor family AT4G14540 75.728 3.99e-53 165.0
Hetu42g02319 . 32 121 CCAAT-HAP3 Transcription Factor family AT5G47640 31.25 2.64e-12 60.1
Hetu42g02851 . 35 215 CCAAT-HAP3 Transcription Factor family AT2G13570 58.791 8.10e-63 192.0
Hetu46g02125 . 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 73.469 4.60e-51 157.0
Hetu47g02091 . 48 145 CCAAT-HAP3 Transcription Factor family AT2G47810 73.469 9.01e-51 157.0
Hetu47g02255 . 78 115 CCAAT-HAP3 Transcription Factor family AT2G38880 73.684 4.26e-14 62.4
Hetu49g01795 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 60.0 1.96e-73 220.0
Hetu50g01156 . 57 124 CCAAT-HAP3 Transcription Factor family AT4G14540 86.957 8.02e-39 125.0
Hetu50g01595 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 60.577 1.37e-73 221.0
Hetu51g01898 . 1 201 CCAAT-HAP3 Transcription Factor family AT5G47670 60.476 6.38e-74 221.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hetu CBFD_NFYB_HMF 1.7e-27 CL0012 TF NF-YB