AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00690 ATGGCCGAAAAGAATAGCAATTTGGCTACTGGAACCTCTGGACCAAGTCAAGAAGAAGATGGAAACTCCGGCGGCATCCGGACGGTGGAGATGCTGCTGAGACTATTTCCGGTGGGCCTGTGTGTGGCTGCACTAGCTGTCATGATTAAGGATTCTGAGACTAATGATTATGGCTCTTTATCCTACTCCAACTTCACTGGTTTTAGGTTTTTGGTGCATGCGAATGGCGTATTGGCTGGTTATTCTCTAGTGACAGCTGCTTTCACGGCAGTACCTCGTCCAATGACCATGCCTCGAGCCTGGACCTTCTTTCTCCTTGATCAGGTTTCGACATACTTGATATTGGCTGCGGGTGCTGTGGCAACTGAGGTGGCATTTTTGGCTTATAAAGGCGACGTGACGGTGACATGGAGTGAAGCGTGTGGGACCTACGGTCACTTTTGTAAACAAGCAACAGCGTCAATCATCATCACTTTCTTGGTGGTGATTTGTTACATTTTACTATCGTTAATCTCATCGTATAGGCTCTTCAGCAAGTATGATGCACCTGTCGAGTACCGTAACAAGGGAATTGAAATCGTTGACTTTGGGAATTAA 597 46.73 MAEKNSNLATGTSGPSQEEDGNSGGIRTVEMLLRLFPVGLCVAALAVMIKDSETNDYGSLSYSNFTGFRFLVHANGVLAGYSLVTAAFTAVPRPMTMPRAWTFFLLDQVSTYLILAAGAVATEVAFLAYKGDVTVTWSEACGTYGHFCKQATASIIITFLVVICYILLSLISSYRLFSKYDAPVEYRNKGIEIVDFGN 198
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00690 198 PANTHER CASP-LIKE PROTEIN 4A4 27 178 - -
Hetu33g00690 198 NCBIfam plant integral membrane protein TIGR01569 32 174 IPR006459 -
Hetu33g00690 198 MobiDBLite consensus disorder prediction 1 22 - -
Hetu33g00690 198 Pfam Casparian strip membrane protein domain 25 164 IPR006702 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00690 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
299956 Hetu31g00536 Hetu33g00690
300964 Hetu32g00598 Hetu33g00690
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:24111117 Hetu41g00636 Hetu-Chr41:21282065 dispersed
Hetu Hetu-Chr16:143965469 Hetu33g00690 Hetu-Chr33:24111117 wgd
Hetu Hetu-Chr17:136088337 Hetu33g00690 Hetu-Chr33:24111117 wgd
Hetu Hetu-Chr31:19883157 Hetu33g00690 Hetu-Chr33:24111117 wgd
Hetu Hetu-Chr32:24278564 Hetu33g00690 Hetu-Chr33:24111117 wgd