AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00691 ATGCTTAGTTGCAGATCTTGTGATGTCGGCTACGATCCATATAAACGTACAATAACAACAGTAGCCAGCAGCAGCAGCATCAATTTCAGTGATCATTTATTCATTCAACAAACTCTCTCTCTCTCTCTCTCTTCATTTTCCATGAGGGAAGAAGGAATCAGCTCCTCCGGTGACCCCTTACTTTTCCCCAATTCTCCTCCTCCTACCGCTGCTGCCAGCTCTGCTGGAGCATCATCACCAGCTGTTGCCACCAATGCTGGTAGTGCTGCAGACTGGTTGGGTCATGGTCAGGGGTCGAAAGCTGGTTCACTTTCACGAGTTAGCTCACAGCCCATGTGGATCTCGTTGAGTACGAGTGCGGGTGGTTCGGCTCTTGGTTCGTCAAAGCCTTCATGCAGACCATGGGAACGGGGTGATCTTTTAAGACGGTTGTCTACTTTCAGTCCTGCTAATTGGTTTGGAAAACCTAAGGCTGCTAGTTCACTTTCTTGTGCTAGACGAGGTTGGGTGAATGTAGATGTTGATATGATTCAGTGTGAGGCTTGTGGGGAAAATCTGACATATGATACACAAGATTCATGGGCTCGTACAGAAGGTGAAAACGGTGAAGAGTTTGCTAACCTGCTGGACGAAGGACATAATGCCACCTGTCCTTGGAGAAGAAACAGCTGTGCCGCAAGCTTGGTTCAGTTTCCTCCGACCCCACCATCCGCTCTGATCGGTGGTTACAAGGACCGTTGTGACGGACTGATTCAGTTTCCGTATTTACCCGTTGTGGCTAATTCGGCTCTTGACCAGATGAAGCTTTCTAGAGGTCTAGAAATTGACCGGTTTCTAGCCCAGTCGTCTGGTTATCCGGCAGACATTATGTCTGATTCGGAAATAAGCATATATTTGCGTGCTCAGAAGTTGATAAGTCTCTGTGGATGGGAGCCGAGGTGGTTTCCAAACGTTCAAGATTGCGAAGAGCATTCGGCTCAATCAGCTAGAAACGGTGGTTCGTTCAGTCCAATTAAAGATTACGACCCATTACAAGATCGAGGCCCAAACAAGAAACGTTTCTCTAACTCAACTAGAAAAGGCTCTCGAGTCAGGTCAAAGTTCGAATCCGGATCGTTGCTGCTGGATTGTAGCTTATGTGGCGCGACAGTGAGGATTTTGGACTTTGTTCGTGTCAATCTTCCCGCTCGTCTTGCTCCAAACAACATTGATGTTCCCGAAACGAGTAAAAAGATGGCGATAACGCGTGGAGTAAGTGCCGCTAGTGCCGTTAGCGGGTGGGTGGCTGCTGATGGGGAGGAAGAAGAGCAGACAGAGGACGTTTATGAAGCGGCAAATTCGAACGTCAGGGTGGATTTAAATCTTACAATGGGGAGTGGATTTTCGACTGGTCACGGGCATAAACGACCGATATCTGAATTATATCAAGATGTGAATATAGGTCGCGATCTAGTCATCGGGCAGCCAGCTGGCAGTGAGGTTGGTGACCGTGCAGCATCGTACGAATCCCGAGGTCCCACTACTTTCAAACGGAACGTTGACGAAGGTGGGTCCACTGTTGATAGACCACATGGGCTGATTCGCCAGGCGGATAGCGTTGAGGGTGTCGTCATTGACTGTGACGGCGACGAAATCAACGACAGCAAGACGTCCACAGGCCTGTTTAAACGAGCCTGCGAGTCGTCATCCGGTGCAGGTCCCAGTCAGACCTTGTATTTCGATATCGGTCAGGCCGGTCCATCAAGCCAAGGTCATGAACACGCAGCACGCGCTTCTTCTGTTATCGCAATGGATACGATTTGTCATAGTGAAGATAATGATTCTATGGAAAGCGTCGAAAACCATCCGGTGTTTGTCGATGAGGTCAACTACCCGCCCACATCAGCGATTAACCCTGACCCGAACGAAACTTCAGACATGAACCAAAGCATCCAGGCTCAACAGAGCACGTGCCCGCCTGCGGTTTGGGTCAACAGTGAAATAGGCGTTAGCAGCACTAACGATGACAAAGTACTGAATACCGAAACCGCCAGGGATTACATGCGGGGCCGGGACGGTCCTAGCTTGGCAGTTAGTGGCGGTAGTGTCGGAATGGCTGCGAGCCATGAAGCGGAGATTCACGGTTTGATTCATAGAACTGAAAGTGTTGTTGGTGACATGGAACCGGTTACTGGTGTGACGGAGAATCAAGGTCAAACCGGTGAGTTTGTTCTGGAAGAAACGCAACAAGAATATTCCGGAAGGGGGGATAGTGGGTCGAAGGTTGTTGGTTCGGTTAAAGGTGAATCGGTTGAGAGTGGTGAGAAAACTAGTGATTTAAATCTGTTACCACATGAACAAAACTCACACCCTTCTCTTTCTTGCAACGCGGTTGTATATTCGGGCCTTGAAGTATCAAAAGATGAAGTGATGCAGGCCCGTAAGTCGTCTCCTAATGAAGAATATGGGTACCCAAGTTATCCACCAGCAAACGGGTTAGGGCCGCCGAATGGAGAAAGCAAGTTTGAAGAACCTGTTGAGTTTGATCCAATCAAGCATCATAATTTTTTCTGCCCTTGGGTTAACGGTAACGTTGCTGCAGCTGGTGTTATCAACAGTAATAACGGTGCTAGTTCAAGTTCTAGTGCTTTAGCCCTTTGTGGGTGGCAGTTAACTTTAGATGCTTTAGATGGCTTTCAAGGGACTGAACAAAATCAAACGGTTGAATCCGAATCAGCTGCGTCTCTGTACAAGTGCATTCTGATGATCATCAAGGTTCTGGTAAAAAACTCATGGCACACCATTCCTTCAACAGAAACCGTGGCCAAAGTTAAAAATAAATATCCACTGTCTTGTGCAGCCGTAGCTACAAGGAAAACTCGACAACTCTTTTCAAGGCTCGTTAGACAGAGTTAA 2895 48.01 MLSCRSCDVGYDPYKRTITTVASSSSINFSDHLFIQQTLSLSLSSFSMREEGISSSGDPLLFPNSPPPTAAASSAGASSPAVATNAGSAADWLGHGQGSKAGSLSRVSSQPMWISLSTSAGGSALGSSKPSCRPWERGDLLRRLSTFSPANWFGKPKAASSLSCARRGWVNVDVDMIQCEACGENLTYDTQDSWARTEGENGEEFANLLDEGHNATCPWRRNSCAASLVQFPPTPPSALIGGYKDRCDGLIQFPYLPVVANSALDQMKLSRGLEIDRFLAQSSGYPADIMSDSEISIYLRAQKLISLCGWEPRWFPNVQDCEEHSAQSARNGGSFSPIKDYDPLQDRGPNKKRFSNSTRKGSRVRSKFESGSLLLDCSLCGATVRILDFVRVNLPARLAPNNIDVPETSKKMAITRGVSAASAVSGWVAADGEEEEQTEDVYEAANSNVRVDLNLTMGSGFSTGHGHKRPISELYQDVNIGRDLVIGQPAGSEVGDRAASYESRGPTTFKRNVDEGGSTVDRPHGLIRQADSVEGVVIDCDGDEINDSKTSTGLFKRACESSSGAGPSQTLYFDIGQAGPSSQGHEHAARASSVIAMDTICHSEDNDSMESVENHPVFVDEVNYPPTSAINPDPNETSDMNQSIQAQQSTCPPAVWVNSEIGVSSTNDDKVLNTETARDYMRGRDGPSLAVSGGSVGMAASHEAEIHGLIHRTESVVGDMEPVTGVTENQGQTGEFVLEETQQEYSGRGDSGSKVVGSVKGESVESGEKTSDLNLLPHEQNSHPSLSCNAVVYSGLEVSKDEVMQARKSSPNEEYGYPSYPPANGLGPPNGESKFEEPVEFDPIKHHNFFCPWVNGNVAAAGVINSNNGASSSSSALALCGWQLTLDALDGFQGTEQNQTVESESAASLYKCILMIIKVLVKNSWHTIPSTETVAKVKNKYPLSCAAVATRKTRQLFSRLVRQS 964
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00691 964 MobiDBLite consensus disorder prediction 495 523 - -
Hetu33g00691 964 MobiDBLite consensus disorder prediction 742 782 - -
Hetu33g00691 964 MobiDBLite consensus disorder prediction 56 78 - -
Hetu33g00691 964 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 48 919 - GO:0005634(PANTHER)
Hetu33g00691 964 MobiDBLite consensus disorder prediction 326 361 - -
Hetu33g00691 964 MobiDBLite consensus disorder prediction 768 782 - -
Hetu33g00691 964 Pfam C3HC zinc finger-like 134 254 IPR012935 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00691 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299957 Hetu31g00537 Hetu33g00691
300965 Hetu32g00599 Hetu33g00691
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:24117598 Hetu8g01607 Hetu-Chr8:69976940 dispersed
Hetu Hetu-Chr31:19889540 Hetu33g00691 Hetu-Chr33:24117598 wgd
Hetu Hetu-Chr32:24285166 Hetu33g00691 Hetu-Chr33:24117598 wgd
Hetu Hetu-Chr33:24117598 Hetu7g01760 Hetu-Chr7:74054539 wgd