AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00709 ATGGGGAATAAGTTGGGCAGAAGAAGACAAGTTGTTGATGAAAAGTATACAAGACCTCAGGGGCTGTATCAACACAAAGATGTAGATCATAAGAAGCTTAGAAAGCTTATTCTTGACTCAAAGCTTGCTCCTTGTTATCCTGGTGATGATGATTGCAGTTGTGATCTTGAAGAATGCCCTATTTGTTTCTTGTATTATCCAAGTTTGAATAGATCAAGATGTTGTACAAAAGGGATTTGTACAGAGTGTTTTTTGCAGATGAAGACACCGAATTCTACGCGCCCTACGCAATGTCCGTTTTGTAAAACGTTGAACTATGCGGTCGAGTATAGAGGCGTGAAAACTAAAGAGGAAAAGGGGCAAGAGCAAATTGAAGAACAAAGAGTGATAGAAGCGAAAATAAGAATGAGACAACAAGAGATTCAAGATGAAGAGGAAAGAATGCTCAAAAGACAAGAGACGGGTTCTTCAAACAGGGGAATTGAGCCAACGGAGGTTGAATATTTCTCCAGAGGAGCGGCATCTTCTTCAGAAGGTGAGGAAATAGTTTCCGCTTCAAATCCTGGAACAATGAGACATCCCGCACGCAGTAGGGAGAACAGAGATGATGAGTTTGATCTTGATCCTGAAAACATAATGCTCATGGAAGCCATCTGGTTGTCTTTTCAGGAGGATAACAAGCACAGACATGATAACCCTAATTACGGTGACGCCGCCCAATTAGCAAAATACGCAACCGAAGTTCGCCTCTTAGCATCCATGGCCCCACAAGCCGAATACTCAGCTTCATCCTCATCCCCTTCCGGTGGACTCGCATGCGCCATAGCCGCTCTCGCTGAACGCCAGCAAACGGGAGGTGAATCCTCGACTAATTACAACAATTACAGCGGGAATCTATCGACATACAACGCGCATCCCAACCACAGCCAAACAGGGTTATTATCACTTGATAACCATCTCCAAATTAATCACGAGAATTCAGAATTTGGGTACGATGGTAGTTTACGGACGGTAGATGATAATGATGATGTAAGCAGAGGGCAGTATGATGAGGTGGAAAATGGTGGAAATATAGTTCCTGAGAGCTTTGAAGAGCAGATGATGCTAGCGATGGCGGTTTCATTGGCCGAGGCTCGAGCTAGGACTAGCAGTACGCAAGAGGTGGCGTGGATTTAG 1176 44.22 MGNKLGRRRQVVDEKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDDDCSCDLEECPICFLYYPSLNRSRCCTKGICTECFLQMKTPNSTRPTQCPFCKTLNYAVEYRGVKTKEEKGQEQIEEQRVIEAKIRMRQQEIQDEEERMLKRQETGSSNRGIEPTEVEYFSRGAASSSEGEEIVSASNPGTMRHPARSRENRDDEFDLDPENIMLMEAIWLSFQEDNKHRHDNPNYGDAAQLAKYATEVRLLASMAPQAEYSASSSSPSGGLACAIAALAERQQTGGESSTNYNNYSGNLSTYNAHPNHSQTGLLSLDNHLQINHENSEFGYDGSLRTVDDNDDVSRGQYDEVENGGNIVPESFEEQMMLAMAVSLAEARARTSSTQEVAWI 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00709 391 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Hetu33g00709 391 PANTHER PROTEIN SIP5 1 321 IPR039301 GO:0005737(PANTHER)
Hetu33g00709 391 MobiDBLite consensus disorder prediction 144 163 - -
Hetu33g00709 391 MobiDBLite consensus disorder prediction 329 357 - -
Hetu33g00709 391 MobiDBLite consensus disorder prediction 335 349 - -
Hetu33g00709 391 MobiDBLite consensus disorder prediction 171 203 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00709 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299965 Hetu31g00563 Hetu33g00709
300969 Hetu32g00610 Hetu33g00709
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr28:165319162 Hetu33g00709 Hetu-Chr33:25862940 wgd
Hetu Hetu-Chr29:153439735 Hetu33g00709 Hetu-Chr33:25862940 wgd
Hetu Hetu-Chr30:155217230 Hetu33g00709 Hetu-Chr33:25862940 wgd
Hetu Hetu-Chr31:20932483 Hetu33g00709 Hetu-Chr33:25862940 wgd
Hetu Hetu-Chr32:25158485 Hetu33g00709 Hetu-Chr33:25862940 wgd