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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00710 ATGATCATAGAAATGCGAGTTCATGTAGATTGCCCCGGATGCGAGAACAAGATCCGAAAAGCTCTTCAAAGGCTCAAAGGGGTGGAGAACGTAGATATAGACATGGGCTTACAAAAAGTGACAGTCACAGGAATTGCCGACGAGAAGAAAGTGTTAAAAACGGTTAGAAAAACCGGCCGGCGAGCCGAGATATGGAACATACCTTACAACCCTGATATCCGTACACATAACTACAACGTTAATCAACATGCTCAACAGCAACAACACCAAAATGGTGGTTCGGGCCCAGCCCCCTCCGCAACATTCTACACCCGACAACCATCTTCTACGTCATCGTATAACTACTACAAACACGGTTATGATGACCACTATGTTTATAATCCGGTCCAGTCCTCGGGTTTGATCGGACACCAGACGGGTGCTGCGTTTAGTGATGAAAATACCCATGCTGCTTGTAAAATTATGTAG 468 45.51 MIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADEKKVLKTVRKTGRRAEIWNIPYNPDIRTHNYNVNQHAQQQQHQNGGSGPAPSATFYTRQPSSTSSYNYYKHGYDDHYVYNPVQSSGLIGHQTGAAFSDENTHAACKIM 155
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00710 155 MobiDBLite consensus disorder prediction 83 104 - -
Hetu33g00710 155 ProSiteProfiles Heavy-metal-associated domain profile. 1 63 IPR006121 GO:0046872(InterPro)
Hetu33g00710 155 Pfam Heavy-metal-associated domain 6 60 IPR006121 GO:0046872(InterPro)
Hetu33g00710 155 Gene3D - 2 64 - -
Hetu33g00710 155 CDD HMA 4 63 IPR006121 GO:0046872(InterPro)
Hetu33g00710 155 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 2 155 IPR045181 GO:0046872(InterPro)
Hetu33g00710 155 SUPERFAMILY HMA, heavy metal-associated domain 4 66 IPR036163 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00710 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
299966 Hetu31g00564 Hetu33g00710
300970 Hetu32g00611 Hetu33g00710
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:25875530 Hetu49g01426 Hetu-Chr49:61042802 dispersed
Hetu Hetu-Chr31:20950947 Hetu33g00710 Hetu-Chr33:25875530 wgd
Hetu Hetu-Chr32:25164876 Hetu33g00710 Hetu-Chr33:25875530 wgd