AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00840 ATGACCGGAGTGCCATTGGATTTAAGACCACAGAGTTATGGATCACCGCAACAGCCACAAAACGGTTCGTTGCAGACTCAAAATGGGTTCGCTACTGCGCGCAAGCCATCAAGAATGTCGCTTACCGGTTCAAGGGAGAAAGATAAATTTCTTCCTTTTTTGTGTAGATATCTAAGTAGAAAGAAGATTGTGATGATGATTTTAGGTTTATTTGCACTCATGGCTTTCTTATCAGGTTTCTTTAATGCCAATAGAGAAGACGTATCAGAGAGCACAATCTTCAATCATTTTAGCGATGCTTATAACACCTCTTTACAGTTCTCCAGAACATTTCATAGTCAAAACGATGATATTTCTAATATACAAAGAACTCTGTCTATATGCGAAGAAAACCCTCCGACCCGCCATACTTCAGTTGCATCACATTCAACATCCGTTTCGCCTAATAGCAATATATGTCAGAATTTTGCGTTTCCACCCCCTCCTCCAGGTGATCGGAGACGACCCGGACCTAGACCTTGTCCTGTATGCTACCTTCCGGTGGAGGAAGCTATAGCTAGCATGCCGAGCGTCACGTCAGCATCACCTGTTCTTCAACACTTAACTTATTTTCACGAGGAGACTTCTACTAAAACCGAACCACATGAAGGCTCAGATTTCGGTGGGTATCCTTCCATAAAGCAAAGGAATGAATCTTTTGATATTAAAGAATCAATGACTGTACATTGCGGGTTTGTAAAAGGTTGCCGACCTGGTTACAAAACCGGATTCGATATCGATGTATCTGATCTTGTGGAGTTGGAGCAATCTCATGATATTATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATTCAGCAGCCAACTAAGATTAGTGAGGCTGCAAGGGAAAATATACCGTTTTATATGTTTATTGATGAAGAAACCGAAGCATATATGAGAAATTCTAGCGCTTTGGACTACAGAATGAAGGTTGGATTATGGAGAATTATTGTTGTGCATAATGTTCCGTACACCGATTCTAGACGAAATGGAAAGGTCCCGAAGCTTTTACTACACAGACTCTTTCCAAATGTTCGGTATTCTATATGGATTGACGGGAAGCTGCAACTCGTTGTGGATCCATATCAACTTCTTGAAAGGTTTTTGTGGCGTCACAATGCTACGTTTGCTATTTCAAAACATTATAGGCGGTTCGATGTGTTTGAAGAAGCCGAAGCTAATAAAGCTGCAGGAAAATACAACAACGCATCCATTGATTACCAGATTAATTTTTACCGAAACGAAGGTTTAACACCGTATTCTGAGGCTAAGCTTCCTATAATCAGTGATGTTCCGGAAGGTTGTGTAATCATAAGAGAACATACTCCAATAACGAATCTCTTCACGTGTTTATGGTTCAATGAAGTTGACCGGTTTACTTCAAGAGATCAGTTAAGTTTCGCTACTGTACGAGACAAAATCATGGCTCGAGTCAACTGGAGTATTAATATGTTTATGGACTGTGAAAGACGGAATTTCGTTATACAGGCATACCATAGAGATCTACTAGAGCACATGCCACCACCCGCGGCTAAAACGAGTAGTTTAAGACGGGCGCGAGTTAATGTTCCCATTACAGTTCCTATACCTGTGAAGGGTAATACATCATCTGCTAAAAATTCATTAAAGAAAAACGCTGTTAAACGTGGGAAAGGAGAGAGGAGATCTCGTTCTAGGAGGCATGTGAAAAATCCCGGTAACAAGGACAATATGGTCATTTGA 1767 40.69 MTGVPLDLRPQSYGSPQQPQNGSLQTQNGFATARKPSRMSLTGSREKDKFLPFLCRYLSRKKIVMMILGLFALMAFLSGFFNANREDVSESTIFNHFSDAYNTSLQFSRTFHSQNDDISNIQRTLSICEENPPTRHTSVASHSTSVSPNSNICQNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAIASMPSVTSASPVLQHLTYFHEETSTKTEPHEGSDFGGYPSIKQRNESFDIKESMTVHCGFVKGCRPGYKTGFDIDVSDLVELEQSHDIIVASAIFGNYDVIQQPTKISEAARENIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNVPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYNNASIDYQINFYRNEGLTPYSEAKLPIISDVPEGCVIIREHTPITNLFTCLWFNEVDRFTSRDQLSFATVRDKIMARVNWSINMFMDCERRNFVIQAYHRDLLEHMPPPAAKTSSLRRARVNVPITVPIPVKGNTSSAKNSLKKNAVKRGKGERRSRSRRHVKNPGNKDNMVI 588
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00840 588 PANTHER ALKALINE CERAMIDASE-RELATED 37 549 IPR006852 -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 544 558 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 543 588 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 1 43 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 559 577 - -
Hetu33g00840 588 Pfam TOD1-MUCI70, glycosyltransferase-like domain 201 514 IPR048354 -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 133 169 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 155 169 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 133 154 - -
Hetu33g00840 588 MobiDBLite consensus disorder prediction 11 39 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00840 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:34207594 Hetu49g02871 Hetu-Chr49:160507582 dispersed
Hetu Hetu-Chr31:31244361 Hetu33g00840 Hetu-Chr33:34207594 wgd
Hetu Hetu-Chr32:34055534 Hetu33g00840 Hetu-Chr33:34207594 wgd