AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g00870 ATGGGGTTGCCACTCAAACTCACCGTCGTTTCCGCCACCGTCTTGTCCACCGCGGTCATGTTAAAGCTTATATCACTTTTCATAATGAATCTTTCAGTCTCCGACTTCCCTATCATATGGTCCTCCCTCATCACGTGGCTTAAACCGCCTTATCTTTACGTTGTCATCAACGGTATCATCATCACTATCGTCGCTTCTTCGCGGTTACAATCCAAAGTCGACGGTTCTCACGACTCGTTCTCGTCTTTTTCGACGTCTACTGAGCCGGTCAAGGTTGTCCACCCGGTTGAATTACCTCCGGTTCATGTTCATGAACCGGAAGTGTCGTTTCATGGTGATGTGTTGGAAACCGAACCGGTGGATATCGCGGTTGCTGGTTATAATAGTCAGTCGAAATTTGTTGATGTTCCGGTTGTGGAGTTTAGTTCTCCAAAGTTTATTGATGAAACCCTAGATAAAGATATGAAGATTGCAAAGGAAGCTTATGAAGAGATTAAGAAAAATAGGGTTAATAACTCTGTGATCTCGATGTCTGCGTGGTCTCCGTCGGAAATAAACCAAGTAGGTTTATCTTTTCCGACGGAGAAACCACCGGTTTCCGCTAGATTTAGCCGTCGAAAACCGGCCAAAGCCACTCCTGAAGGTGGTAGAACATTGGGAGTTGCAAAACCAAAGCGGCAAGACACACTGGAGACCACGTGGAAGACAATAACCGAGGGTCGGTCTGTACCTTTAACGAGACACCTACGTAAGTCGGACACGTGGGAGACCCACGGACAAAGCCGTGAAAATCGCCAGACGGATGAGTTCGTTACAGAAAGGATGGCAAAATCAGACACGTTTGACGTTAACCGAAGCAGAAAACCGGTCAAACCGCCTCCGGCTCCGTCGAAACTGAGCCGGTCTGGCGGGTCTGGACGGCTTAAGAAAGAACCGTCGGTGGGACAGGAGGAGTTGAACCGGAGAGTCGAAGCGTTTATAAAGAAATTTAATGAGGATATGAGGTTACAAAGGCAAGAATCGTTGAATCAGTACATGGAGATGATTAATCGTGGGGCTCATTAA 1065 47.23 MGLPLKLTVVSATVLSTAVMLKLISLFIMNLSVSDFPIIWSSLITWLKPPYLYVVINGIIITIVASSRLQSKVDGSHDSFSSFSTSTEPVKVVHPVELPPVHVHEPEVSFHGDVLETEPVDIAVAGYNSQSKFVDVPVVEFSSPKFIDETLDKDMKIAKEAYEEIKKNRVNNSVISMSAWSPSEINQVGLSFPTEKPPVSARFSRRKPAKATPEGGRTLGVAKPKRQDTLETTWKTITEGRSVPLTRHLRKSDTWETHGQSRENRQTDEFVTERMAKSDTFDVNRSRKPVKPPPAPSKLSRSGGSGRLKKEPSVGQEELNRRVEAFIKKFNEDMRLQRQESLNQYMEMINRGAH 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g00870 354 Pfam Cotton fibre expressed protein 316 351 IPR008480 -
Hetu33g00870 354 PANTHER COTTON FIBER (DUF761) 17 352 - -
Hetu33g00870 354 MobiDBLite consensus disorder prediction 191 317 - -
Hetu33g00870 354 MobiDBLite consensus disorder prediction 244 286 - -
Hetu33g00870 354 Pfam Domain of unknown function (DUF4408) 37 69 IPR025520 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g00870 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
300018 Hetu31g00747 Hetu33g00870
301017 Hetu32g00803 Hetu33g00870
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:35602832 Hetu50g01407 Hetu-Chr50:64948097 dispersed
Hetu Hetu-Chr39:170701177 Hetu33g00870 Hetu-Chr33:35602832 transposed
Hetu Hetu-Chr31:32345614 Hetu33g00870 Hetu-Chr33:35602832 wgd
Hetu Hetu-Chr32:35433192 Hetu33g00870 Hetu-Chr33:35602832 wgd
Hetu Hetu-Chr33:35602832 Hetu49g01582 Hetu-Chr49:69183422 wgd
Hetu Hetu-Chr33:35602832 Hetu51g01682 Hetu-Chr51:77576067 wgd