AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g01019 ATGCCATGTGCCATGTGGCTCTGGAAAAACATTAATGAAAAAATGCTTCCTCAGTGGCCTGCATTAGTTATCCTTAAACCCTCAAAATCACCAACGCCGCCGTATTGCAGATGGATGAGGGTTCAATTCGCTCGTAACTTCTTCTTCTTCCCCTTACCCTTCGATCATCATCTCCTTAAACTTCGCCCCAACAATAACCTTTTCCGCCGCTTCAATCAATCAACTCTCGTTTCACCACTACCAGAATCTTTCACCATGGGTTCGCAAGCAGCAGCGGACCTCGAGTGGCCCGCTAACAAAGTTAGAGATACGTTTATTACCTTCTTCCAAGATCGGGACCATCGTTATTGGCAATCCAGCCCGGTTGTTCCGGTCAACGATCCCACTCTTCTGTTTGCCAATGCCGGAATGAATCAGTACAAGCCTATTTTCTTGGGTACTGTTGATCCTAACACTGAATTAAGCAAACTGAAGCGTGCCTGCAACACCCAAAAATGCATCCGAGCTGGCGGGAAGCATAACGATCTTGACGATGTTGGCAAAGACACATATCATCACACCTTCTTTGAAATGCTCGGTAATTGGTCATTTGGTGATTACTTTAAAGAAGAAGCCATCGGTTGGGCTTGGGAACTTCTCACAACGGTTTATAAACTACCTACTGATCGGATATATGCTACTTATTTTGGTGGTGATGAGAAATTGGGCCTTCCCGCTGATACTGAAGCTAGAGATATATGGCTCAAATACTTACCATCTGCACGGGTTCTGCCATTTGGTTGTAAAGACAATTTCTGGGAGATGGGTGACACCGGACCTTGTGGGCCCTGTACTGAAATACACTTCGATAGAGTCGGTGGCCGTGACGCTGCTGATTTGGTTAATAACGATGACCCTACATTGATCGAAATATGGAATAACGTGTTTATTCAGTTTAACAGGGAAGCTGACGGTTCTTTAAAACCTCTGCCCGCCAAACACGTGGATACTGGAATGGGTTTCGAAAGATTAACATCAATTCTTCAGAACAAAATGAGCAACTATGATACAGATGTTTTCATACCTATATTTGATGCTATCCAAGCGGCAACTGGTGCTAGACCATATTCAGGCAAAGTGGGCCCAGATGATGTCGATGGGATTGACATGGCATACAGAGTTGTTGCTGACCACATCAGAACTCTTTCATTTGCCATCGCAGATGGTTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTGAGGCGCATTCTTCGCCGAGCTGTACGTTATGGGACAGAAGTACTGAAAGCACAACAAGGATTTTTCAACGGATTGGTAAAAGTTGTGGTGGATGTAATGGGCCATGTTTTTCCCGAGCTAAAACAACAAGAGGCGCGCATTAAAGAGATTATAGCTGAAGAGGAAGCAAGTTTCGGGAGGACTTTACTTCATGGAATTGAGAAGTTTAAGAAGACAGCTCAAGATGTTCAAGGAAAGATATTTAGTGGACAGGATGCATTTGTTTTGTGGGATACTTATGGATTCCCATTGGATCTGACTCAGTTGATGGCAGAAGAAAGAGGGTTGGTAGTTGATGTTGAGGGCTTTAATATCGCTATGAACGAAGCTAGAGAACGATCAAGAAACGCCCAGAATAAGCAAGCCGCTGTTACAATCGTCATGGACGCAGATGCCACCTCAGCACTGCATAAGAGAGGCGTGGCTACAACAAACGACAGTTTCAAGTTTACATGGTTTAAGGACCACAAAAGTGTGATAAAAGCCATTTACACAGGCTCCGAGTATGTGGACCGTGCTGATGCTGGCGATGACGTCGGCATAATTCTCGAGAGCACTAGTTTTTATGCTGAGCAAGGTGGTCAGATATATGATACTGGACTACTTGGTGGCCCATCTGGATCATTTGAAGTCTGTAACGTTCAAATTTACGGTGGTTTTGTTCTTCATCTTGGTAAAATTAGTGGGGAGTCGGCTCGGTTTAACGTCGGTGATGAAGTAATTTGTAAGGTGGACTACGAAAGGCGTCAACGCATTGCTCCTAATCATACATGTACACACATGTTAAATTTTGCTCTCAGGGAAGTACTTGGGAGTCATGTTGACCAGAAAGGATCCATTGTTCTTCCAGAAAAATTAAGGTTTGACTTCTCCCACGGGAAACCCGTAAAGCCCGAAGACCTTCGTAGAATTGAATCAATCGTGAATGAACAAATTAAAGCTGAGCTGGAGGTTTCTGCAAAGGAGGCAAGCCTTTCTGATGCAAAACGAGTAAATGGTTTGCGTGCTGTTTTCGGTGAAGTGTACCCTGATCCAGTTAGGATTGTTGCCATTGGCCGACAAGTGGACGAATTATTGGCTGATCCTGAAAATGAACAATGGTCGTCGATATCTGCAGAACTTTGTGGCGGGACCCATATTTCAAACACACGCGAGGCGAAAGCCTTTGCACTTTTGTCTGAAGAGGGAATTGCTAAGGGGATTAGAAGAGTTACTGCCGTAACAACCGACTATGCTTTTGAAGCTATTAAAAAGGCGTCTGAGCTTGAGCTGGAAGTTGATCTCGCATCTAAACTGGAAGGAAGCCTGCTTGAACAGAAAGTGACATCATTAAATGGTCAAGTAGAGTCTGCCTCGATTCCAACCGCAAAGAAGGTTGATCTTAAGGCAAAAATCTCCATCCTTCAGAATCAAGTAATAAAGGCAAAAAAGAAGACTGCTGAAGAGAACATACGTAAAGCTGTTGAAGCTGCTACTAAGGCAGCAGAAGTTGCATCTTCTGAGGGGAAATCCTTCTGTATTTCACAAGTTGGTGTAGGGTCAGACACTGCTGCTATTCGTGAAGCAGTTGTCAAAGTCATGGAGCAAAAGGGAATGGCGGTGATGGTTTTTACCACCGATGAACAATCAAAGAAGGCACTAGTTTGTGCGGGTGTGCCAGAAAAAAGCGATAAAAGCAACCAATTGAAGGTTTTAGATTGGCTCAAGGCTGCACTGAAGCCGCTAGAAGGCAAAGGCGGTGGAGGGAAAGGCGGTCTTGCTCAAGGCCAGGGTCCCGATATAAAACACGTGGATGAAGCAATAGACGTTGCCAAGTCATTCGCGGCGCTCAAACTGGGCTGA 3123 44.67 MPCAMWLWKNINEKMLPQWPALVILKPSKSPTPPYCRWMRVQFARNFFFFPLPFDHHLLKLRPNNNLFRRFNQSTLVSPLPESFTMGSQAAADLEWPANKVRDTFITFFQDRDHRYWQSSPVVPVNDPTLLFANAGMNQYKPIFLGTVDPNTELSKLKRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKEEAIGWAWELLTTVYKLPTDRIYATYFGGDEKLGLPADTEARDIWLKYLPSARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRVGGRDAADLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGMGFERLTSILQNKMSNYDTDVFIPIFDAIQAATGARPYSGKVGPDDVDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGTEVLKAQQGFFNGLVKVVVDVMGHVFPELKQQEARIKEIIAEEEASFGRTLLHGIEKFKKTAQDVQGKIFSGQDAFVLWDTYGFPLDLTQLMAEERGLVVDVEGFNIAMNEARERSRNAQNKQAAVTIVMDADATSALHKRGVATTNDSFKFTWFKDHKSVIKAIYTGSEYVDRADAGDDVGIILESTSFYAEQGGQIYDTGLLGGPSGSFEVCNVQIYGGFVLHLGKISGESARFNVGDEVICKVDYERRQRIAPNHTCTHMLNFALREVLGSHVDQKGSIVLPEKLRFDFSHGKPVKPEDLRRIESIVNEQIKAELEVSAKEASLSDAKRVNGLRAVFGEVYPDPVRIVAIGRQVDELLADPENEQWSSISAELCGGTHISNTREAKAFALLSEEGIAKGIRRVTAVTTDYAFEAIKKASELELEVDLASKLEGSLLEQKVTSLNGQVESASIPTAKKVDLKAKISILQNQVIKAKKKTAEENIRKAVEAATKAAEVASSEGKSFCISQVGVGSDTAAIREAVVKVMEQKGMAVMVFTTDEQSKKALVCAGVPEKSDKSNQLKVLDWLKAALKPLEGKGGGGKGGLAQGQGPDIKHVDEAIDVAKSFAALKLG 1040
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g01019 1040 SUPERFAMILY Translation proteins 602 671 IPR009000 -
Hetu33g01019 1040 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 349 549 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Hetu33g01019 1040 Gene3D - 598 671 - -
Hetu33g01019 1040 CDD AlaRS-core 98 344 - -
Hetu33g01019 1040 Gene3D - 672 848 - -
Hetu33g01019 1040 Gene3D - 927 1035 - -
Hetu33g01019 1040 FunFam Alanine--tRNA ligase, cytoplasmic 95 345 - -
Hetu33g01019 1040 Coils Coil 885 917 - -
Hetu33g01019 1040 Gene3D Bira Bifunctional Protein; Domain 2 97 345 IPR045864 -
Hetu33g01019 1040 SUPERFAMILY Class II aaRS and biotin synthetases 97 348 IPR045864 -
Hetu33g01019 1040 PANTHER ALANYL-TRNA SYNTHETASE 93 1036 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Hetu33g01019 1040 NCBIfam alanine--tRNA ligase 100 1018 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 Coils Coil 527 547 - -
Hetu33g01019 1040 SUPERFAMILY ThrRS-AlaRS common domain 671 842 IPR018163 GO:0000166(InterPro)
Hetu33g01019 1040 Pfam DHHA1 domain 888 1034 IPR003156 GO:0003676(InterPro)
Hetu33g01019 1040 FunFam Alanine--tRNA ligase 570 670 - -
Hetu33g01019 1040 Pfam tRNA synthetases class II (A) 100 675 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Hetu33g01019 1040 FunFam Alanine--tRNA ligase, cytoplasmic 672 847 - -
Hetu33g01019 1040 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 96 845 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Hetu33g01019 1040 PRINTS Alanyl-tRNA synthetase signature 410 423 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 PRINTS Alanyl-tRNA synthetase signature 386 402 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 PRINTS Alanyl-tRNA synthetase signature 329 342 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 PRINTS Alanyl-tRNA synthetase signature 302 313 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 PRINTS Alanyl-tRNA synthetase signature 174 185 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Hetu33g01019 1040 SMART tRNA-SAD-4 773 832 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Hetu33g01019 1040 FunFam Alanine--tRNA ligase 927 1035 - -
Hetu33g01019 1040 Hamap Alanine--tRNA ligase [alaS]. 96 1039 IPR023033 GO:0004813(InterPro)
Hetu33g01019 1040 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 773 831 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g01019 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
300065 Hetu31g00910 Hetu33g01019
301064 Hetu32g00968 Hetu33g01019
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3369985 Hetu Hetu33g01019 Hetu-Chr33:43367800 Hetu50g02315 Hetu-Chr50:125386885
3485867 Hetu Hetu32g00968 Hetu-Chr32:44668499 Hetu33g01019 Hetu-Chr33:43367800
3490905 Hetu Hetu37g01419 Hetu-Chr37:80075931 Hetu33g01019 Hetu-Chr33:43367800
3625081 Hetu Hetu31g00910 Hetu-Chr31:40886080 Hetu33g01019 Hetu-Chr33:43367800
3628512 Hetu Hetu32g00967 Hetu-Chr32:44667316 Hetu33g01019 Hetu-Chr33:43367800