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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g01043 ATGGCCAAAAGTTCCTTCAAACTGGAACACCCACTAGAGAGGCGCCAAGCCGAGGCTGCACGGATCAGGGAGAAGTATCCTGACAGAATTCCGGTGATTGTGGAGAAGGCTGAAAGAAGCGACATACCCGACATAGACAAGAAGAAATATCTGGTCCCTGCTGATCTGACCGTTGGACAGTTTGTTTATGTGGTGAGGAAGAGGATTAAACTGAGTGCTGAAAAAGCCATCTTTATCTTTGTGAAGAACATTCTGCCACCTACTGCTGCCATGATGTCTGCCATCTATGAAGAAAACAAAGACGAGGATGGTTTCCTGTACATGACTTACAGTGGGGAGAACACGTTTGGAGCATGTTGA 360 46.67 MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAC 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g01043 119 FunFam Autophagy-related protein 1 117 - -
Hetu33g01043 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A-1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 GO:0006995(PANTHER)
Hetu33g01043 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Hetu33g01043 119 CDD Ubl-ATG8 12 114 - -
Hetu33g01043 119 Gene3D - 1 118 - -
Hetu33g01043 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g01043 K08341 GABA(A) receptor-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
105607 Hetu13g00091 Hetu33g01043
105847 Hetu14g00251 Hetu33g01043
106233 Hetu15g00134 Hetu33g01043
108356 Hetu22g02882 Hetu33g01043
108677 Hetu23g02878 Hetu33g01043
300072 Hetu31g00930 Hetu33g01043
301070 Hetu32g00978 Hetu33g01043
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3370007 Hetu Hetu33g01043 Hetu-Chr33:44134285 Hetu34g01720 Hetu-Chr34:128767893
3625091 Hetu Hetu31g00930 Hetu-Chr31:41477465 Hetu33g01043 Hetu-Chr33:44134285
3628520 Hetu Hetu32g00978 Hetu-Chr32:45239997 Hetu33g01043 Hetu-Chr33:44134285