AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g01353 ATGAAGATGAACACCAAATACCTAAAACTCTTCATCTTCCTCTTCCTCCTCAACTCCATCACCCTCATTCTCTACTTCTCCTCCCACCCCCACCTCTTCCACCACCGTCCCACCACCCCCACCACCACCACCCACCACCAATCCACCATCTCCGACCACACCCACCTCCCATCTCCCCCCAATTCCAACAAACCCTGGCCAATCTTACCTTCCTACCTCCCATGGTCCTTAAACCCCAACACCCACTTCAGATCATGCGAATCCTACTTCGGCAACGGCTTCACTCGCCGCATCGATCTCCTAAAACCGGTTCAAACCGGTGGGTGGTTCAGGTGTTTTTATAGTGAGACGTTGAGGAGTTCGGTGTGTGAGGGTGGGGGGTTGAGGATGCATCCGGAGAAGATTAAGATGTCAATGGGTGGTGAGGTTTTGGAGAGTGTGATTGGTAGATCGGAGGATGAGGAGTTTCCGGAGTTTGAAGATGGGGCCTTTGATTTGGTGGGTCAGAAGAGGGGCGTTGAGAGGGTTGCTAGTGAGGGGTTTTTGAATGAGTTTGTTCCGAGAGGGGCGGTTGAGAGGCACACGATGAGGGATTTGATCGGTTCTATGCGGTTCGTTGGGGCGGATGAGTTCCATTGCTCTGAGTGGGTTGAGGAGCCAACGCTTTTGATCACCCGTTTCGAGTATGCAAACCTTTTCCACACTATAACAGACTGGTACAGTGCCTACGTGTCTTCAAGAGTTACCGGCTTGCCAAACAGACCTCAAATAGTTTTTGTAGATGGTCACTGCATGACACAATTGGAAGAAACATGGAAAGCCGTATTCTCGGGTTTGCGATACGCTAAAAACTTCAGCGGGCCCGTTTGCTTTCGTCACGCTATCCTTTCACCTTTGGGCTACGAAACCGCCATGTTCCGTGGTCTATCTGAAACCGTCGATTGTGACGGGGCTTCGGCCCATGATTTATGGCAGAAGCCCGATGACAAAAAAACAGCTCGAATCTCAGAATTCGGGGAGATGATACGGGCCGCGTTTTCACTTCCGTTACACCAACAACACCACAGCTCAAAATCCGGTTCACGAAATCACAACGTCTTGTTCGTCAGGCGCGAAGATTATCTCGCACATCCCCGCCACGCTGGCAAGGTGCAATCAAGACTCAGTAACGAACAAGAAGTATTCGACGCGTTAAAAAGCTGGTCAACGGGTCATACCGAATGTAAAATTAATTTAATCAACGGGCTTTTTGCGCATATGTCGATGAAAGAACAGGTGAGAGCGATTCAAGACGCATCGGTTATCGTGGGTGCGCATGGGGCGGGACTTACTCACATAGTGTCGGCAACACCGGACACAGAAATACTAGAAATCGTTTCTAGCGAGTATCGAAGGCCTCATTTTGAACTAATTTCGAAATGGAAAGGACTAAATTACCACCCGATATATCTAGGTGGGTCCCACGCTAGTCCCTCGGTAGTTATTGCCAAGCTCAGGGACATTTTGAAGAACATAGGATGCTGA 1524 49.74 MKMNTKYLKLFIFLFLLNSITLILYFSSHPHLFHHRPTTPTTTTHHQSTISDHTHLPSPPNSNKPWPILPSYLPWSLNPNTHFRSCESYFGNGFTRRIDLLKPVQTGGWFRCFYSETLRSSVCEGGGLRMHPEKIKMSMGGEVLESVIGRSEDEEFPEFEDGAFDLVGQKRGVERVASEGFLNEFVPRGAVERHTMRDLIGSMRFVGADEFHCSEWVEEPTLLITRFEYANLFHTITDWYSAYVSSRVTGLPNRPQIVFVDGHCMTQLEETWKAVFSGLRYAKNFSGPVCFRHAILSPLGYETAMFRGLSETVDCDGASAHDLWQKPDDKKTARISEFGEMIRAAFSLPLHQQHHSSKSGSRNHNVLFVRREDYLAHPRHAGKVQSRLSNEQEVFDALKSWSTGHTECKINLINGLFAHMSMKEQVRAIQDASVIVGAHGAGLTHIVSATPDTEILEIVSSEYRRPHFELISKWKGLNYHPIYLGGSHASPSVVIAKLRDILKNIGC 507
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g01353 507 MobiDBLite consensus disorder prediction 38 61 - -
Hetu33g01353 507 Pfam Glycosyltransferase 61 353 455 IPR049625 GO:0016757(InterPro)
Hetu33g01353 507 MobiDBLite consensus disorder prediction 38 59 - -
Hetu33g01353 507 PANTHER PUTATIVE-RELATED 13 507 IPR007657 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g01353 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Event-related genes

Select Gene_1 Gene_2 Event_name
111640 Hetu33g01353 Hetu8g01286
300157 Hetu31g01208 Hetu33g01353
301146 Hetu32g01258 Hetu33g01353
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:62856889 Hetu40g03920 Hetu-Chr40:204658399 dispersed
Hetu Hetu-Chr31:57339652 Hetu33g01353 Hetu-Chr33:62856889 wgd
Hetu Hetu-Chr32:60809451 Hetu33g01353 Hetu-Chr33:62856889 wgd
Hetu Hetu-Chr33:62856889 Hetu8g01286 Hetu-Chr8:52909466 wgd