AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu33g02444 ATGGGGGAAACCAAGGAGAACAAGTTGAAGCCACCGTCGAAGTTTTCGGATGAGAATCAAGCGCCGTTAAAGTCTAGAAACAGCAATGTGCAGTCGAATTTGAAACCCAGATCGATTTGGGGTTCCAACATTGTGAAAGGGTTTTCAGCTGATAAGAAAACCAGATCGCAACAAGTTGGTAAGAAATCGCAACAACAACCTCTTACTACAGTCTCCAACACGAATTCGAAAAACCCTTTTGCTCAGAATCGAACAAAACGGTCACTTATCGGAGATTTATCCTGTTCTGTCACTGCTACACAAGTTCATCCACAAGGGCTGTATAAATCATCGTCTTCATCAGGTTCTCGTGATCTGTTTGCCGAGCTTGATCAACTCAGAAGCTTGCTTCAAGAATCTAAAGACAGAGAAGCCAAACTGCAGGCTGAGTTAGGTGATTTCAAGAAGAAAAACCTCAAGGCTTTGGAGCTCGAACAAGCGGTTGAATCGAAGACTAGTGAAATAGAAACTCTCAAAAGTAAAATCGATTTGCTCGAATCGGAAAACGCCAGTCTTTCTGAGCAGTTGAATTCCCAGCAGTTGCAAGAAAATATAGCAAAGGGGGTTGCTAATGGCGTTGAGGTAGATGTTCTTAAGTTGAGAAGGCTGAATGCTGAGCTTCATCTTCAAAAGAGAAATCTTTGTTTCAGAATCTCTTCAATGGAGTCAGAACTAGCTGCCATAGCCAAAGATTCTGAGAATGAATTCGTTCAGAAGATCAAAGCGGAGGCATCTATGTTACGACAAACAAACGAAGATTTATGTAAACAAGTTGAAGATCTACAAGTAAGTCGATTAAACGAGGTTGAGGAGCTTGTCTATCTTAGATGGGTCAACACTTGTCTTAAAAACGAGTTACAAAATTCAACGTTCGTAAGTTCCGAAGTAACATCAAGTCCAGCTTCTGTTGAATGGCTCAGTGGTTCTGTATCAAGTGAGGGAAGTTCAGAACATGATAGTACCCAGAAAACGTTAAGTTTGATTAAGAAAATGAAAAGGTGGCCGGTTCTTGATGAAGAAACGAATGTCTCGGAACCGATTAACTATAAACTGAATCTCGGTTGGTCAGACGGAAGACGGCATTCTATTAGCGGAGCAAATTGCTGTCAAGAAGATCTCGTGGTGAATAAAAGACGACAATCCGATGGTTTTATATGTTTAACGGAAACGAAGGGTGTAAATGATATGAATGTGATCCAAGGGTCGCAATTGCGTGAAGCTACGAAATTGAAAACGTTATTGGACGTTGAAAAACGGGCGTTGCGTGTTCCTAACCCCCCTCCGAAACCGTCTAGCTTTACTTCTAAGGAACATACGGAGGTTAGTAAACAAGTACCGCTGCCACCGCCGCCGCCTCCGCCGCCGCCACCACCACCGAAGTTCATGGGGAGAAACAACGGTGGAGGGGTTGTACAACGAGCTCCGGAAGTGGTCGAGTTTTATCATTCGCTTATGAAAAGGGACTCCAGGAAAGATACGTTAAACGATGGGGTATGTGATGCGTTAGATGTGAATAATGTACGGAATAGTATGATTGGTGAAATCGAAAACCGGTCATCGCATTTGCTTGCGATAAAGGAGGATGTTGAGACTCAAGGGGAATTTGTGAATTCGTTAATACGAGAGGTCAACAATGCGATTTATCCGGAAATAGAAGACGTGGTGGCTTTTGTGAACTGGCTGGATGATGAACTCGGCTTTCTTGTGGACGAGAGGGCTGTGCTGAAACACTTCGATTGGCCGGAGAAGAAAGCCGATACATTAAGAGAAGCAGCATTTGCATATCGAGATCTAAAGAAGCTGGAGCATGAAATTTCAAATTATAAGGATAATTACCACATACCGTGTGACTTGGCGTTGAAGAAAATGGTTTCCTTGTCTGAAAAGATGGAGCGTATCGTTTATAATCTTCTTAGAACAAGAGATACATTGATGCGTAATTGCAAAGAGTTCCATATTCCCACTGATTGGATGCTTGATTCAGGAATATTAAACAAGATTAAGCTGGGATCGGTTAAGTTGGCAAAGAAATACTTAAAAAGAGTTGCTACAGAACTTCAAACGAAGGGAACAACCGAGAAAGATTCTTCAATGGACTATATGCTACTTCAAGGAGTGCGATTTGCTTTCCGCATTCATCAGTTTGCTGGTGGATTTGATGTCGATACAATGCATGCGTTCGAGGAGCTTCGAAACTTGGCTCTTGTTTTGAACAAAAAGTAG 2262 42.26 MGETKENKLKPPSKFSDENQAPLKSRNSNVQSNLKPRSIWGSNIVKGFSADKKTRSQQVGKKSQQQPLTTVSNTNSKNPFAQNRTKRSLIGDLSCSVTATQVHPQGLYKSSSSSGSRDLFAELDQLRSLLQESKDREAKLQAELGDFKKKNLKALELEQAVESKTSEIETLKSKIDLLESENASLSEQLNSQQLQENIAKGVANGVEVDVLKLRRLNAELHLQKRNLCFRISSMESELAAIAKDSENEFVQKIKAEASMLRQTNEDLCKQVEDLQVSRLNEVEELVYLRWVNTCLKNELQNSTFVSSEVTSSPASVEWLSGSVSSEGSSEHDSTQKTLSLIKKMKRWPVLDEETNVSEPINYKLNLGWSDGRRHSISGANCCQEDLVVNKRRQSDGFICLTETKGVNDMNVIQGSQLREATKLKTLLDVEKRALRVPNPPPKPSSFTSKEHTEVSKQVPLPPPPPPPPPPPPKFMGRNNGGGVVQRAPEVVEFYHSLMKRDSRKDTLNDGVCDALDVNNVRNSMIGEIENRSSHLLAIKEDVETQGEFVNSLIREVNNAIYPEIEDVVAFVNWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFAYRDLKKLEHEISNYKDNYHIPCDLALKKMVSLSEKMERIVYNLLRTRDTLMRNCKEFHIPTDWMLDSGILNKIKLGSVKLAKKYLKRVATELQTKGTTEKDSSMDYMLLQGVRFAFRIHQFAGGFDVDTMHAFEELRNLALVLNKK 753
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu33g02444 753 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 15 745 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Hetu33g02444 753 MobiDBLite consensus disorder prediction 51 82 - -
Hetu33g02444 753 MobiDBLite consensus disorder prediction 1 38 - -
Hetu33g02444 753 Coils Coil 250 270 - -
Hetu33g02444 753 Coils Coil 116 150 - -
Hetu33g02444 753 MobiDBLite consensus disorder prediction 457 475 - -
Hetu33g02444 753 Coils Coil 154 195 - -
Hetu33g02444 753 SUPERFAMILY Formin homology 2 domain (FH2 domain) 462 617 - -
Hetu33g02444 753 Coils Coil 597 624 - -
Hetu33g02444 753 MobiDBLite consensus disorder prediction 18 38 - -
Hetu33g02444 753 MobiDBLite consensus disorder prediction 432 478 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu33g02444 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr33:139678410 Hetu47g03233 Hetu-Chr47:201283270 dispersed
Hetu Hetu-Chr22:142786048 Hetu33g02444 Hetu-Chr33:139678410 transposed
Hetu Hetu-Chr24:1748769 Hetu33g02444 Hetu-Chr33:139678410 transposed
Hetu Hetu-Chr1:115395966 Hetu33g02444 Hetu-Chr33:139678410 wgd
Hetu Hetu-Chr3:103315374 Hetu33g02444 Hetu-Chr33:139678410 wgd
Hetu Hetu-Chr3:110443989 Hetu33g02444 Hetu-Chr33:139678410 wgd
Hetu Hetu-Chr31:146954713 Hetu33g02444 Hetu-Chr33:139678410 wgd
Hetu Hetu-Chr32:148784329 Hetu33g02444 Hetu-Chr33:139678410 wgd