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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g00113 ATGCTCTTATACCACGATGTTCCCTGCTCTTCGATCGCCGTAGAATCCATCATTAGCGTCGGAACCGGCGGATTAATCTGGGGTTTATGTTCTGGTTCCTACGATGCCAAACAAAAAGGTCTGACCGGTATTTCTCGAGCTTCTTTCCTTGCCAAGACGGTCGGTAAATATGGGTTCCAATGTGGACTCTTTGCCGGAATCTTTTCATTTACGCGCTGTGGGATTCGAAGATACCGCAAGAAAAGTGATTGGGTGAATGCTCTAGTTGCAGGCGGAGTGGCAGGGGCAGCCATTGGTGCTGGAACCCGAAACTGGCGGCAGGTTGCAGTGATGACCGCTTTTCTTTCTGGGTTTTGTGCCATTGCTGACCAATCAAGAGCAATCTGA 387 49.61 MLLYHDVPCSSIAVESIISVGTGGLIWGLCSGSYDAKQKGLTGISRASFLAKTVGKYGFQCGLFAGIFSFTRCGIRRYRKKSDWVNALVAGGVAGAAIGAGTRNWRQVAVMTAFLSGFCAIADQSRAI 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g00113 128 Pfam Tim17-Tim22-Tim23-Pmp24 family 14 118 - -
Hetu3g00113 128 PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 11 124 IPR039175 GO:0008320(PANTHER)|GO:0030943(PANTHER)|GO:0042721(InterPro)|GO:0042721(PANTHER)|GO:0045039(PANTHER)|GO:0045039(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g00113 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
268646 Hetu2g00175 Hetu3g00113
269381 Hetu3g00113 Hetu2g00175
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:4454495 Hetu3g00113 Hetu-Chr3:4326199 wgd
Hetu Hetu-Chr2:5485706 Hetu3g00113 Hetu-Chr3:4326199 wgd