AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g00176 ATGCTTGGGTCGGGCCAGAGTGGTATCGCTTTGAGACACTGTATCTATCTGCACTCTTACCTCAACCACCTAGGGCTGCCGGAGAAAATGGCTATCGCCGTCGCATCTTGCTGGATTAATGCGTTCGCCTCCGCCGGAGCTTCTTGCTCTTCACTCTCCTCTCAACGTCTCTTCTCCTCGCCGCCAATTTCAGCTACTCGGTTAGTCATTCCGAAAGCTACGAGTAAGCGTCAAAATCCGAAGAGAAATCAGAAGGAGAGTGCTCGTAAATCATCACCGGAGAAAGAAGCTAATATTCAAAAGCTTTCAAGAAGATCAAGAGATGAAAAGTATTCAAATGCTGATGATTACAGTGATACAAAAAGTGCAGAACAACAACCTCAGTCAACCGCCTTCAAGTCGTTTGGTACACAGAGAAAAAACGCCAAAGGCTTTATGGGTAACTTGAAGGACCAACAGGGCGAGACTACTAAAATTCAAGATGCTTCTTTTCTTAATGCTGTTGTGAAGGTTTATTGTACTCATACTGCACCTGATTATTCCCTCCCTTGGCAAAAGCAAAGACAATATACAAGTACAGGAAGTGCTTTCATGATTGGTGATGGAAAGCTTTTGACAAATGCTCATTGTGTTGAACATAACACACAAGTCAAAGTCAAGAGAAGGGGGGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGTGACATAGCTTTGCTCTCAGTGGAAAATGAGAAATTCTGGAAAGGAGCCGAGCCACTTCAGTTCGGCCATTTGCCTCGTCTTCAGGATCCAGTTACTGTTGTAGGGTATCCACTTGGAGGAGACACCATTTCAGTGACCAAAGGAGTTGTATCTCGAATAGAGGTCACCTCCTATGCTCATGGATCAGCTGAACTGTTGGGCATTCAGATTGATGCAGCAATTAATCCTGGTAATAGTGGTGGCCCTGCTTTCAATGATCAGGGAGAATGCATCGGTGTCGCATTTCAGGTGTACAGGTCCGATGATACTGAAAACATTGGGTATGTAATTCCAACAACTGTCGTGTCTCATTTCCTAGATGATTATGAGAGAAACGGGAAGTACACCGGTTTCCCTTCCCTTGGAATATTATTGCAAAAGTTAGAGAATCCAGCTTTACGTGCCTGCTTAAAAGTGCCATCTAACGAGGGTGTACTTGTCCGTCGTGTGGAGCCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTCGATGGTGTAGAAGTCGGATCAGAAGGGACAGTCCCATTTCGATCAACTGAACGCATTGCATTCCGCTACCTCATTAGTCAAAAATTTACAGGGGATATAGCAGAACTTGGTATCATCAGATCAGGGGCTTTCATGAAAGTTCACACTGCTATGAATCCACGTGTTCATTTGGTACCGTATCATATCGAAGGGGGTCAGCCATCATACTTGATAGTAGCTGGCTTAGTTTTTACTCCTCTGTCAGAACCACTAATAGATGAGGAATGTGAAGACAGCATAGGGTTAAAATTATTGACAAAGGCACGGTATTCCATGGCGAGGTTCAAAGGAGAACAAATTGTGATTTTATCACAGGTATTGGCAAATGAAGTTAACATCGGGTATGAGGATATGAGCAATGAGCAGGTTCTAAAGTTCAATGGAAATCGAATAAAGAACATTCACCATCTTGCTCATCTTATTGATTCATGCACAGACAAATACTTGGTTTTCGAATTTGAGGACAATTATCTTGCTGTTTTAGACCGAGAGGCTTCATCGGCCGCCTCACCCTGCATTCTTAAAGATTACGGCATCCCGTCAGAGAGGTCTTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGTGAAAACCAAGTAATCGAACATCACGATCTTGGTGACAGTCCTGTCACAAATTCGGATTTCGGGTCTGATGGACTTCAATGGGCTTGA 1977 43.96 MLGSGQSGIALRHCIYLHSYLNHLGLPEKMAIAVASCWINAFASAGASCSSLSSQRLFSSPPISATRLVIPKATSKRQNPKRNQKESARKSSPEKEANIQKLSRRSRDEKYSNADDYSDTKSAEQQPQSTAFKSFGTQRKNAKGFMGNLKDQQGETTKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGKLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWKGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDTENIGYVIPTTVVSHFLDDYERNGKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGVEVGSEGTVPFRSTERIAFRYLISQKFTGDIAELGIIRSGAFMKVHTAMNPRVHLVPYHIEGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEDMSNEQVLKFNGNRIKNIHHLAHLIDSCTDKYLVFEFEDNYLAVLDREASSAASPCILKDYGIPSERSSDLLEPYVDPVGENQVIEHHDLGDSPVTNSDFGSDGLQWA 658
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g00176 658 PANTHER - 73 625 - GO:0004252(PANTHER)
Hetu3g00176 658 SUPERFAMILY PDZ domain-like 394 473 IPR036034 GO:0005515(InterPro)
Hetu3g00176 658 PRINTS HtrA-DegQ protease family signature 224 244 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu3g00176 658 PRINTS HtrA-DegQ protease family signature 303 320 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu3g00176 658 PRINTS HtrA-DegQ protease family signature 411 423 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu3g00176 658 PRINTS HtrA-DegQ protease family signature 202 214 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu3g00176 658 MobiDBLite consensus disorder prediction 118 133 - -
Hetu3g00176 658 Gene3D - 263 373 IPR043504 -
Hetu3g00176 658 Gene3D - 476 627 IPR046449 -
Hetu3g00176 658 Pfam Trypsin-like peptidase domain 194 332 - -
Hetu3g00176 658 ProSiteProfiles PDZ domain profile. 358 426 IPR001478 GO:0005515(InterPro)
Hetu3g00176 658 CDD PDZ-serine-protease 371 468 - -
Hetu3g00176 658 FunFam protease Do-like 9 253 363 - -
Hetu3g00176 658 Gene3D - 374 470 IPR036034 GO:0005515(InterPro)
Hetu3g00176 658 MobiDBLite consensus disorder prediction 68 133 - -
Hetu3g00176 658 Gene3D - 149 252 IPR043504 -
Hetu3g00176 658 Pfam PDZ domain 479 620 IPR041517 -
Hetu3g00176 658 MobiDBLite consensus disorder prediction 637 658 - -
Hetu3g00176 658 SUPERFAMILY Trypsin-like serine proteases 164 366 IPR009003 -
Hetu3g00176 658 FunFam Protease Do-like 9 149 251 - -
Hetu3g00176 658 MobiDBLite consensus disorder prediction 79 117 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g00176 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
268660 Hetu2g00229 Hetu3g00176
269396 Hetu3g00176 Hetu2g00229
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr39:166154518 Hetu3g00176 Hetu-Chr3:7145850 dispersed
Hetu Hetu-Chr2:7737734 Hetu3g00176 Hetu-Chr3:7145850 wgd