AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g00212 ATGTCGCAGCCAGCGACCGCGGCAGTGATGCCAGAGGCATTCGCTAAGGACGCGATAATCTCGTGGTTCCGAGGCGAATTCGCTGCGGCAAACGCAATAATCGACGCTTTGTGCGGGCATTTGTCGCAATTTGAAGGCGGTAAAGGCGAGTATGAATCGGTGTTTTCGGCTATACATCGACGCCGGTTGAATTGGATTCCGATTCTTCAGATGCAGAAGTATTATTCCATCGCCGATGTGACGATGGAACTACAGAACGTCGTCGAGAAAAAAATTGTTGAAGAAAAGGTGGAGACTAAAGGTGAAATTTCAGAAATGGATTCCGTTTACATCGATATCGATAAGAATAATGGTGGTGAAGTTGTGGATGATGATTCCAATAAAGATAATCATTCACCAAAGAGTGGGATCACTGATGCAGGACTACAGGAAGTGCAATCAGCGGGGGAAAGCGTCGAGATATGCTCAAACGAAGAAGACTGGGAGGCGCGACGTGCTGAAATCAAGATGACAAAAGGGTTCATAGCCAAGGAGTCTGTAAAAGGGCATATGGTGAATGTTGTGAGAGGTCTGAAGATGTATGAGGACATACTCAACGCGACAGAGCTCTCTAAGTTGACTGAATACGTAACTGAACTTCGTGTCGCTGGCCAAAATGGTGAACTCTCAGGTGAGACTTTTATCATGTATAATCAGCAGTCAAAGGCAATCAAAAGAGAGCTTATTCAGTTTGGAGCTCCAATATTTGGACAAATTAAAGATGAGGCTACAAATAATAAATCCCAAGAGAGCAATATCGAGCCGATTCCTGCTCCTCTTGAAGGTGTGATTGACCACCTAATTCAGTTTCACTTGATTTCCGAAAACAGACGACCAAACAGTTGCATTATAAACTTTTTCGACGAGGGGGAATTTTCACAGCCTTTCTTGAAACCACCTCATTTAGAGCAACCCATAGCTACACTTGTTATGTCTGATTCAACAATGGCTTTTGGGCGTACTCTAGTTTGTGATAATGATGGAAACTACAAAGGACCACTTATGCTTTCCCTTAAGGAAGGGTCACTCTTAGTGATGAGAGGAAATAGTGCTGACATGGCACGCCACGTCATGTGTCAATCTCCGACTAAACGAATCAGTGTCTCATTTTTCAAAGTCCGAATAGACACCTATGACAAAAATTTAGCCCCAAAAGATCCGATGAGTGGAACGATGACCCTATGGCAACCTAGTCTTACAACTCCATTAATGACACCGATTACTACGGGACCACTAGATGGGTATGATGCAATCCACGTTCTCCCCAAGTGGGGTGCAATTCGATCCCCACAGCTGCTTATGTTAGCACCAGTCCGTCCAATGGTTATGAGCCCTAGAAGGCTGCCACGTGGAGGGACTGGTGTTTTCTTACCATGGAATGGGGGGTCAAAAAAACCCAACAAGCATGTACCGCCTCGTGCTCAAAGAGGGCGTCTTCTTGCACTTCACGCCTCAACTGAAACACACAAAATGGATCGAACCCCTGAGTCGGGCATTAGCGTGGCTTGA 1548 45.41 MSQPATAAVMPEAFAKDAIISWFRGEFAAANAIIDALCGHLSQFEGGKGEYESVFSAIHRRRLNWIPILQMQKYYSIADVTMELQNVVEKKIVEEKVETKGEISEMDSVYIDIDKNNGGEVVDDDSNKDNHSPKSGITDAGLQEVQSAGESVEICSNEEDWEARRAEIKMTKGFIAKESVKGHMVNVVRGLKMYEDILNATELSKLTEYVTELRVAGQNGELSGETFIMYNQQSKAIKRELIQFGAPIFGQIKDEATNNKSQESNIEPIPAPLEGVIDHLIQFHLISENRRPNSCIINFFDEGEFSQPFLKPPHLEQPIATLVMSDSTMAFGRTLVCDNDGNYKGPLMLSLKEGSLLVMRGNSADMARHVMCQSPTKRISVSFFKVRIDTYDKNLAPKDPMSGTMTLWQPSLTTPLMTPITTGPLDGYDAIHVLPKWGAIRSPQLLMLAPVRPMVMSPRRLPRGGTGVFLPWNGGSKKPNKHVPPRAQRGRLLALHASTETHKMDRTPESGISVA 515
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g00212 515 MobiDBLite consensus disorder prediction 496 515 - -
Hetu3g00212 515 MobiDBLite consensus disorder prediction 116 138 - -
Hetu3g00212 515 SUPERFAMILY Clavaminate synthase-like 183 383 - -
Hetu3g00212 515 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 13 503 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
Hetu3g00212 515 MobiDBLite consensus disorder prediction 117 132 - -
Hetu3g00212 515 Gene3D - 175 391 IPR037151 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g00212 K10767 mRNA N6-methyladenine demethylase [EC:1.14.11.53]
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Event-related genes

Select Gene_1 Gene_2 Event_name
416264 Hetu31g02268 Hetu3g00212
416411 Hetu32g02296 Hetu3g00212
416533 Hetu33g02221 Hetu3g00212
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr3:8843562 Hetu47g03163 Hetu-Chr47:198125551 dispersed
Hetu Hetu-Chr1:8596205 Hetu3g00212 Hetu-Chr3:8843562 wgd
Hetu Hetu-Chr10:70713240 Hetu3g00212 Hetu-Chr3:8843562 wgd
Hetu Hetu-Chr12:56939946 Hetu3g00212 Hetu-Chr3:8843562 wgd
Hetu Hetu-Chr3:8843562 Hetu31g02268 Hetu-Chr31:132314350 wgd
Hetu Hetu-Chr3:8843562 Hetu32g02296 Hetu-Chr32:134362201 wgd
Hetu Hetu-Chr3:8843562 Hetu33g02221 Hetu-Chr33:126231528 wgd