Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu3g00256 | ATGAGCCACGCCGACGTAGACACATTGATGTCCGATTTCCTCCGCAACTCCGGCGGCGTTGCGCTCATCGACGGTGGCCTTGCGACGGAGCTCGAACGCTACGGCGCCGACCTCAACGATCCTCTCTGGAGCGCTAAATGCCTCCTCACTTCTCCTCATCTTATTCGACAGGTACACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACAGCATCTTACCAGGCCACAATTCAAGGGTTTGAGGCTAAAGGATATTCTTCAGAAGACGGTGAGTCCATGCTTAGAAAAAGTGTAGAAATTGCTTGTGAAGCAAGGGATTTGTATCATCAAAGATGCCGTGAATCGTCGGTTGATTATACCGGTGATGGTAGGATTTTCAAAAAACGTCCTGTTTTAGTTGCTGCATCTGTAGGGAGTTATGGGGCTTATCTTGCTGATGGTTCTGAATACAGTGGGGACTATGGTGATGCAATGAACTTGGAATTTTTGAAAGGGTTTCACCGTAGAAGGGTACAAGTTTTAGCGGAATCTGGTGCTGATCTGATAGCATTCGAAACAATACCAAATAAGCTAGAAGCACAGGCGTTTTCTGAGCTTCTTGAAGAAGGCATAAATATTCCCGCATGGTTTGCATTTAACTCCAAAGACGGTGTGAATGTGGTGAGCGGTGATTCGTTAGCCGAATGTGCGGCAGTTGCGGATTCAAGCAAGAAAGTTGTTGCTGTAGGAATCAACTGTACCCCTCCTAGATTCATTGGTGGTCTCATTTCCACAATAAAAAAGGTGACAAATAAACCAATTCTTATATATCCAAACAGTGGTGAAAGCTATGATGCTCAACTAAAACAGTGGGTGCAAAACACTGGAGTTGGAGAAGAGGATTTTGTTTCATATGTGAACACATGGTGTGAGATGGGTGCATCGCTTGTTGGAGGCTGCTGCAGAACTACACCCGACACAATTAGAGCCATTCACGGGACTCTTCCCAGCCGATCCGCTTCTACACCCGTTGTTGAAACTCTTCAAAGTGAGCCGGGACTTGTGATGATCAAAACCGCATAG | 1068 | 45.79 | MSHADVDTLMSDFLRNSGGVALIDGGLATELERYGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADIIITASYQATIQGFEAKGYSSEDGESMLRKSVEIACEARDLYHQRCRESSVDYTGDGRIFKKRPVLVAASVGSYGAYLADGSEYSGDYGDAMNLEFLKGFHRRRVQVLAESGADLIAFETIPNKLEAQAFSELLEEGINIPAWFAFNSKDGVNVVSGDSLAECAAVADSSKKVVAVGINCTPPRFIGGLISTIKKVTNKPILIYPNSGESYDAQLKQWVQNTGVGEEDFVSYVNTWCEMGASLVGGCCRTTPDTIRAIHGTLPSRSASTPVVETLQSEPGLVMIKTA | 355 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu3g00256 | 355 | Pfam | Homocysteine S-methyltransferase | 22 | 327 | IPR003726 | - | |
| Hetu3g00256 | 355 | FunFam | Homocysteine S-methyltransferase | 10 | 329 | - | - | |
| Hetu3g00256 | 355 | ProSiteProfiles | Homocysteine-binding domain profile. | 9 | 330 | IPR003726 | - | |
| Hetu3g00256 | 355 | SUPERFAMILY | Homocysteine S-methyltransferase | 17 | 333 | IPR036589 | - | |
| Hetu3g00256 | 355 | PIRSF | BHMT | 10 | 117 | IPR017226 | GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro) | |
| Hetu3g00256 | 355 | PIRSF | BHMT | 285 | 347 | IPR017226 | GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro) | |
| Hetu3g00256 | 355 | PIRSF | BHMT | 165 | 265 | IPR017226 | GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro) | |
| Hetu3g00256 | 355 | Gene3D | - | 10 | 328 | IPR036589 | - | |
| Hetu3g00256 | 355 | PANTHER | ZGC:172121 | 13 | 331 | IPR051486 | GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu3g00256 | K00547 | homocysteine S-methyltransferase [EC:2.1.1.10] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 110490 | Hetu28g00421 | Hetu3g00256 | |
| 111114 | Hetu30g00403 | Hetu3g00256 | |
| 416535 | Hetu33g02252 | Hetu3g00256 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr28:22599657 | Hetu3g00256 | Hetu-Chr3:10508690 | dispersed | |
| Hetu | Hetu-Chr3:10508690 | Hetu49g00307 | Hetu-Chr49:10178081 | dispersed | |
| Hetu | Hetu-Chr33:128208488 | Hetu3g00256 | Hetu-Chr3:10508690 | transposed | |
| Hetu | Hetu-Chr1:10491504 | Hetu3g00256 | Hetu-Chr3:10508690 | wgd | |
| Hetu | Hetu-Chr28:22598159 | Hetu3g00256 | Hetu-Chr3:10508690 | wgd | |
| Hetu | Hetu-Chr29:34941848 | Hetu3g00256 | Hetu-Chr3:10508690 | wgd | |
| Hetu | Hetu-Chr3:10508690 | Hetu30g00403 | Hetu-Chr30:22371751 | wgd |