AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g00256 ATGAGCCACGCCGACGTAGACACATTGATGTCCGATTTCCTCCGCAACTCCGGCGGCGTTGCGCTCATCGACGGTGGCCTTGCGACGGAGCTCGAACGCTACGGCGCCGACCTCAACGATCCTCTCTGGAGCGCTAAATGCCTCCTCACTTCTCCTCATCTTATTCGACAGGTACACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACAGCATCTTACCAGGCCACAATTCAAGGGTTTGAGGCTAAAGGATATTCTTCAGAAGACGGTGAGTCCATGCTTAGAAAAAGTGTAGAAATTGCTTGTGAAGCAAGGGATTTGTATCATCAAAGATGCCGTGAATCGTCGGTTGATTATACCGGTGATGGTAGGATTTTCAAAAAACGTCCTGTTTTAGTTGCTGCATCTGTAGGGAGTTATGGGGCTTATCTTGCTGATGGTTCTGAATACAGTGGGGACTATGGTGATGCAATGAACTTGGAATTTTTGAAAGGGTTTCACCGTAGAAGGGTACAAGTTTTAGCGGAATCTGGTGCTGATCTGATAGCATTCGAAACAATACCAAATAAGCTAGAAGCACAGGCGTTTTCTGAGCTTCTTGAAGAAGGCATAAATATTCCCGCATGGTTTGCATTTAACTCCAAAGACGGTGTGAATGTGGTGAGCGGTGATTCGTTAGCCGAATGTGCGGCAGTTGCGGATTCAAGCAAGAAAGTTGTTGCTGTAGGAATCAACTGTACCCCTCCTAGATTCATTGGTGGTCTCATTTCCACAATAAAAAAGGTGACAAATAAACCAATTCTTATATATCCAAACAGTGGTGAAAGCTATGATGCTCAACTAAAACAGTGGGTGCAAAACACTGGAGTTGGAGAAGAGGATTTTGTTTCATATGTGAACACATGGTGTGAGATGGGTGCATCGCTTGTTGGAGGCTGCTGCAGAACTACACCCGACACAATTAGAGCCATTCACGGGACTCTTCCCAGCCGATCCGCTTCTACACCCGTTGTTGAAACTCTTCAAAGTGAGCCGGGACTTGTGATGATCAAAACCGCATAG 1068 45.79 MSHADVDTLMSDFLRNSGGVALIDGGLATELERYGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADIIITASYQATIQGFEAKGYSSEDGESMLRKSVEIACEARDLYHQRCRESSVDYTGDGRIFKKRPVLVAASVGSYGAYLADGSEYSGDYGDAMNLEFLKGFHRRRVQVLAESGADLIAFETIPNKLEAQAFSELLEEGINIPAWFAFNSKDGVNVVSGDSLAECAAVADSSKKVVAVGINCTPPRFIGGLISTIKKVTNKPILIYPNSGESYDAQLKQWVQNTGVGEEDFVSYVNTWCEMGASLVGGCCRTTPDTIRAIHGTLPSRSASTPVVETLQSEPGLVMIKTA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g00256 355 Pfam Homocysteine S-methyltransferase 22 327 IPR003726 -
Hetu3g00256 355 FunFam Homocysteine S-methyltransferase 10 329 - -
Hetu3g00256 355 ProSiteProfiles Homocysteine-binding domain profile. 9 330 IPR003726 -
Hetu3g00256 355 SUPERFAMILY Homocysteine S-methyltransferase 17 333 IPR036589 -
Hetu3g00256 355 PIRSF BHMT 10 117 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Hetu3g00256 355 PIRSF BHMT 285 347 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Hetu3g00256 355 PIRSF BHMT 165 265 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Hetu3g00256 355 Gene3D - 10 328 IPR036589 -
Hetu3g00256 355 PANTHER ZGC:172121 13 331 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g00256 K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
110490 Hetu28g00421 Hetu3g00256
111114 Hetu30g00403 Hetu3g00256
416535 Hetu33g02252 Hetu3g00256
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr28:22599657 Hetu3g00256 Hetu-Chr3:10508690 dispersed
Hetu Hetu-Chr3:10508690 Hetu49g00307 Hetu-Chr49:10178081 dispersed
Hetu Hetu-Chr33:128208488 Hetu3g00256 Hetu-Chr3:10508690 transposed
Hetu Hetu-Chr1:10491504 Hetu3g00256 Hetu-Chr3:10508690 wgd
Hetu Hetu-Chr28:22598159 Hetu3g00256 Hetu-Chr3:10508690 wgd
Hetu Hetu-Chr29:34941848 Hetu3g00256 Hetu-Chr3:10508690 wgd
Hetu Hetu-Chr3:10508690 Hetu30g00403 Hetu-Chr30:22371751 wgd