AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g01381 ATGGCGGAAGAGTTGGTGTTGGACACAGCGATCAGAGACTGGGTCCTAATCCCCTTATCAGTAGTCATGGTTCTCATCGGAATCCTCCGCTACTTTGTCTCCAAGCTCATGCGCACTTCTCAACTGCCTGATTCCAAAATCATCAAAGAAGGGCAGGTGATAATTAGGGCTCGAAATCTACGTGCGGCTGCTAATTTCATACCTGTGAAGGCGTTTCGTGCTCGGAAAGTTTATTATACCAATGAGTCTATGAGATTGAATATTGGTTATGAGGCTGGATTTGATGTTTCCAAAGAGTCCAAATTTGTTGACATATTTGTTAGTAACATTGACCAAAATAGTGAAAAGATTATGAATGGTTTAATTGCTTTTGGTTGTACGACATTGCTCTTGCATTTGCAGGAAAACGGTTTACTTCATGTTCCCAAGGGCCAGGCTCAGAATCCACAAGCACAAATGTTTTCTGATCCAAACATGGCTATGGATATGATGAAGAAGAATCTTTCCATGATCATACCACAGACCCTCACTTTTGCATGGGTTAACTTCTTCTTCTCCGGGTTCGTAGCAGCAAAGATCCCTTTTCCACTGACTCAGAGGTTTAGATCCATGCTACAGAACGGGATTGATTTGAGTACTGTTGATGTCAGCTACGTTAGCAGTCGTTCTTGGTACTTTCTTAATCTGTTTGGATTGAGAGGTTTGTTTAGTCTCATTTTGGGAGAGGAAAATGCCACAGACGATACACAGCGTATGATGCAAATGAGTGGATTTGGCTTTGACCCATCAAAGAGTTTAGGTGCGGAAAAAGACGGTTTAGATATAGTTCAGCATGATTGGGTCCTTCCGAAATTCGAGCAACGTGCCGAAGCCGTGCTCAGAAAACGCCTTAGCAGCTAA 900 42.78 MAEELVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRTSQLPDSKIIKEGQVIIRARNLRAAANFIPVKAFRARKVYYTNESMRLNIGYEAGFDVSKESKFVDIFVSNIDQNSEKIMNGLIAFGCTTLLLHLQENGLLHVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENATDDTQRMMQMSGFGFDPSKSLGAEKDGLDIVQHDWVLPKFEQRAEAVLRKRLSS 299
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g01381 299 PIRSF TMP-111 107 296 IPR008568 GO:0016020(InterPro)
Hetu3g01381 299 PIRSF TMP-111 1 123 IPR008568 GO:0016020(InterPro)
Hetu3g01381 299 PANTHER UNCHARACTERIZED 130 296 IPR008568 GO:0016020(InterPro)|GO:0034975(PANTHER)|GO:0072546(PANTHER)
Hetu3g01381 299 Pfam Integral membrane protein EMC3-TMCO1-like 4 244 IPR002809 GO:0016020(InterPro)
Hetu3g01381 299 SMART DUF106-2 4 244 IPR002809 GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g01381 K23564 ER membrane protein complex subunit 3
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
268117 Hetu2g01355 Hetu3g01381
416274 Hetu31g02403 Hetu3g01381
416421 Hetu32g02413 Hetu3g01381
416544 Hetu33g02322 Hetu3g01381
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr31:140346118 Hetu3g01381 Hetu-Chr3:75353249 dispersed
Hetu Hetu-Chr32:142080712 Hetu3g01381 Hetu-Chr3:75353249 dispersed
Hetu Hetu-Chr33:133429920 Hetu3g01381 Hetu-Chr3:75353249 dispersed
Hetu Hetu-Chr3:75353249 Hetu9g03027 Hetu-Chr9:159833637 dispersed
Hetu Hetu-Chr1:85828482 Hetu3g01381 Hetu-Chr3:75353249 wgd
Hetu Hetu-Chr2:75885820 Hetu3g01381 Hetu-Chr3:75353249 wgd