AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu3g01383 ATGGCTGATGGTATATCAAGCTTTTGGGGGCCGGTCACATCCTCCCATGAATGGTGTGAGAAAAATTATGCGGTTTCTTCATATGTTGCTGAGTTTTATAATACCATCTCGAATATCCCGTGCATTGTTTTGGCACTTGTTGGCCTTTTAAGCTCGTTGATACAACGTTTCGAGAAGAGATTTAGTGTTCTACACTTGTCAAACATGGCACTCGCGATCGGAAGCGTGATGTATCATGCTACACTACAACATGTGCAACAACAAAGTGACGAAACACCAATGGTATGGGAAATGCTCCTCTACATCTACATCCTATATTCACCCGATTGGCACTACCGTAGCACCATGCCCACATTCCTCTTTCTATACGGCATTTCATTCGCTGTTCTCCACTCCATTATCCGTTTCGATATAGGATTCAAACTTCATTACGTGATGCTATGCGTATTGTGCATTCCCCGGGTTTACAAATACTACATCTACACACAAGATATACGCGCCAAACGCCTTGCAAAGTTCTATGTGGCTACCCTTTTGTTGGGTAGTTTATGCTGGTTAGGTGACCGCTTCTGCTGCAACCAGATATCCAGCTGGCCAGTCAACCCGCAAGGCCACGCGATGTGGCATGTCTTCATGGGCTTCAATTCCTACTTTGCGAACACGTTCTTGATGTTTTGCCGGGCCCAGCAACGCGAATGGAGCCCAGAAGTTGTTCATTTCATGGGAATTCTTCCTTATGTGAGGATCAAAAAACCGAAGACGCATTAA 768 45.05 MADGISSFWGPVTSSHEWCEKNYAVSSYVAEFYNTISNIPCIVLALVGLLSSLIQRFEKRFSVLHLSNMALAIGSVMYHATLQHVQQQSDETPMVWEMLLYIYILYSPDWHYRSTMPTFLFLYGISFAVLHSIIRFDIGFKLHYVMLCVLCIPRVYKYYIYTQDIRAKRLAKFYVATLLLGSLCWLGDRFCCNQISSWPVNPQGHAMWHVFMGFNSYFANTFLMFCRAQQREWSPEVVHFMGILPYVRIKKPKTH 255
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu3g01383 255 PANTHER ALKALINE CERAMIDASE 1 254 IPR044219 GO:0006914(InterPro)|GO:0009651(InterPro)|GO:0098542(InterPro)
Hetu3g01383 255 Pfam Ceramidase 10 240 IPR008901 GO:0006672(InterPro)|GO:0016020(InterPro)|GO:0016811(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu3g01383 K04711 dihydroceramidase [EC:3.5.1.-]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
268119 Hetu2g01357 Hetu3g01383
416273 Hetu31g02400 Hetu3g01383
416420 Hetu32g02411 Hetu3g01383
416543 Hetu33g02319 Hetu3g01383
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr31:140185454 Hetu3g01383 Hetu-Chr3:75416572 dispersed
Hetu Hetu-Chr32:142060341 Hetu3g01383 Hetu-Chr3:75416572 dispersed
Hetu Hetu-Chr33:133269176 Hetu3g01383 Hetu-Chr3:75416572 dispersed
Hetu Hetu-Chr3:75416572 Hetu49g02674 Hetu-Chr49:147300445 dispersed
Hetu Hetu-Chr1:85983844 Hetu3g01383 Hetu-Chr3:75416572 wgd
Hetu Hetu-Chr2:76066062 Hetu3g01383 Hetu-Chr3:75416572 wgd