AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu45g01443 ATGCCTTCAATCCCAGAAGACCCAATCCTAACCCCAAACCCCGACCGATTCTGCATGTTCCCAATCCAATACCCACAAATCTGGGAAATGTACAAAAAAGCCGAAGCCTCATTCTGGACCGCAGAAGAAGTCGACTTATCACAAGACCAACAACACTGGGACTCGTTATCCGACAACGAACGTCACTTCATTACTCACGTACTCGCTTTCTTCGCTGCATCAGATGGCATTGTATTGGAAAACCTCGCTGGCCGCTTCATGAAAGAAGTACAGATCTCCGAGGCCCGTGCGTTTTACGGCTTTCAAATCGCGATTGAGAATATCCACTCTGAAATGTACAGTTTGCTGTTGGAATCGTACATCAAAGATTCTGCTGAAAAAAACCGTTTGTTCCGTGCTATTGAGACCATACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAAATGGATCGACGGTTCAGAATCGTTTGCAGAGAGAATAATTGCCTTTGCTTGTGTTGAAGGAATATTCTTTTCTGGTAGCTTTTGTGCGATTTTCTGGTTGAAGAAGCGCGGGTTGATGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGAGGGTTTGCGTTGCGATTTCGCTTGCTTGCTGTATAAGTTGTTGAATACAAAGTTGAGTGAGGAGCGGGTGAAAGGGATTGTGGCGGATGCGGTAGAGATTGAGAGGGAGTTTGTTTGTGATGCCTTACCGTGTGGGCTGGTTGGGATGAATGGTGGGTTGATGAGTCAGTATATCGAGTTTGTGGCGGATAGGTTGTTGGGGTCGTTAGGATGTGAGAAATTGTATGGCGTGTCGAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAGGGGAAGACGAATTTTTTTGAGAAGAGGGTTGGGGAGTATCAGAAGGCTTCGGTTATGTCGAATTTGAATGGGAATGGGGATACTCATGTGTTCAAGATGGATGAAGATTTCTAA 990 45.76 MPSIPEDPILTPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDQQHWDSLSDNERHFITHVLAFFAASDGIVLENLAGRFMKEVQISEARAFYGFQIAIENIHSEMYSLLLESYIKDSAEKNRLFRAIETIPCVQKKANWAMKWIDGSESFAERIIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLRCDFACLLYKLLNTKLSEERVKGIVADAVEIEREFVCDALPCGLVGMNGGLMSQYIEFVADRLLGSLGCEKLYGVSNPFDWMELISLQGKTNFFEKRVGEYQKASVMSNLNGNGDTHVFKMDEDF 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu45g01443 329 Pfam Ribonucleotide reductase, small chain 16 282 IPR000358 GO:0009263(InterPro)
Hetu45g01443 329 ProSitePatterns Ribonucleotide reductase small subunit signature. 105 121 IPR030475 -
Hetu45g01443 329 SUPERFAMILY Ferritin-like 4 307 IPR009078 -
Hetu45g01443 329 Gene3D Ribonucleotide Reductase, subunit A 3 307 IPR012348 GO:0016491(InterPro)
Hetu45g01443 329 CDD RNRR2 17 291 IPR033909 GO:0009263(InterPro)
Hetu45g01443 329 PANTHER RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN 7 329 IPR000358 GO:0009263(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu45g01443 K10808 ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
Hetu45g01443 K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
312192 Hetu44g01343 Hetu45g01443
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr41:49217679 Hetu45g01443 Hetu-Chr45:94591673 dispersed
Hetu Hetu-Chr45:94591673 Hetu48g03417 Hetu-Chr48:197417709 dispersed
Hetu Hetu-Chr44:85260654 Hetu45g01443 Hetu-Chr45:94591673 wgd