AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu46g00931 ATGGCTGAAAACTTGATCCAGAGGCTAGAAGCCGCCGTAACACGGCTGGAATCATTCTCCCGCGGCTCTCTTTCTCAGCCGCAAGCTGCTCCACTCGACGCCGCATCAGCCTCATCGGAACCGTCCATCGTCGCATTTGACGATCTCATCACGCAATACGTCGATAAGGTCTCCGATGCGTCCGAGAAGATCGGCGGACAGATCAAGGATATTTCGAATGTTCTTAAACAGGCGTTTTCCGCTCAGAAGGAGCTTCTCGTTAAAATTAAACAAACTCAGCATCGGAACGATGTCGTTTTTAAACCTGATGCTGCAGGAATGGCGGAATTTCTGAGGCCATTAAATGAAAAAATAGGTGAAGCAGTTAAAATGACAGAAGGACCCCGTTCCGATTTCTTCAACCACGTGAGGTCTGTGGCTGAAAGTCTGACCGCTTTAGCATGGATTGCATATACAGGGAAAAATTGCGGAATGAGCATGCCTATTGCACATGTTGAAGAATGTTGGCAGTCAGCTGAGTTTTATAGTAACAAGGTCCTTGTAGAATTCAAAAATAAAGATCCAAGTCACGTAGAATGGGCAAAAGCTCTCAAGGAGCTTTATGTACCAGGGTTACGGGATTATGTAAAGAGTCACTATCCTTTGGGACCCGTATGGAGTGCAACAGGGGCAACTGTATCTGCTCCATCAAAGTCTTCTGGACCAGGTGCTCCTGCTGCTCCAAATCCTCCACCAGCTTCACTCGCCAGCTCATCATCTTCTTCATCTTCTTCGTCCCGTCCACAACAAGGAATGTCTGCGGTTTTTCAAGAAATTAGTTCAAAGCCTGTTACTGCTGGATTAAAAAAAGTTACAGATGATATGAAGACGAAAAACCGCACAGATAGAGCAGGATTTGTGAGTTCTGGTGAAAAAGAACCACGCAAGAGTGCGCCAGCAGCAGCTGCTAAAGTTGGTCCTCCAAAATTTGAGCTTGTGATGGGTCGCAAATGGGTCGTTGAGAATCAAATCGGCGTGAAGGATTTGTCTATTGATGATTGTGATCCAAGACAAACAGTTTATATTTTCGGATGCAAAGATTCAGTTCTTCAGATAAAAGGGAAAGTTAACAACATAACTGTTGACAAATGCACAAAAATGGGTGTCCTATTTACGGTTAGTGGTGAATTTGTGATCTACGATGTTGTTGCCGCTTTTGAGATTGTTAATTGCAGCAGTCTTGAGGTGCAATGCCAGGGTGCAGCGCCTACCATTTCAATAGACAACACAGCAGGTGTCCAGCTGTACTTGAGCAAAGATTCTCTAGAAGCTTCCATCACAACTTCCAAGGCAAGTGAAGTTAATGTGATGGTACCTCCCGAAGATCCCAATGCTGATATGGCGGAACATCCTATGCCACATCAGTACATTCACACTTACCAGGATGGTCACTTTGTTACAACCCCTGTGTCCCACTCTGGAGCGTAA 1467 45.33 MAENLIQRLEAAVTRLESFSRGSLSQPQAAPLDAASASSEPSIVAFDDLITQYVDKVSDASEKIGGQIKDISNVLKQAFSAQKELLVKIKQTQHRNDVVFKPDAAGMAEFLRPLNEKIGEAVKMTEGPRSDFFNHVRSVAESLTALAWIAYTGKNCGMSMPIAHVEECWQSAEFYSNKVLVEFKNKDPSHVEWAKALKELYVPGLRDYVKSHYPLGPVWSATGATVSAPSKSSGPGAPAAPNPPPASLASSSSSSSSSSRPQQGMSAVFQEISSKPVTAGLKKVTDDMKTKNRTDRAGFVSSGEKEPRKSAPAAAAKVGPPKFELVMGRKWVVENQIGVKDLSIDDCDPRQTVYIFGCKDSVLQIKGKVNNITVDKCTKMGVLFTVSGEFVIYDVVAAFEIVNCSSLEVQCQGAAPTISIDNTAGVQLYLSKDSLEASITTSKASEVNVMVPPEDPNADMAEHPMPHQYIHTYQDGHFVTTPVSHSGA 488
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu46g00931 488 Gene3D - 319 487 IPR016098 -
Hetu46g00931 488 MobiDBLite consensus disorder prediction 246 266 - -
Hetu46g00931 488 Pfam CAP N-terminal conserved motif 3 39 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
Hetu46g00931 488 ProSiteProfiles C-CAP-cofactor C-like domain profile. 320 465 IPR017901 -
Hetu46g00931 488 SMART carp 404 441 IPR006599 -
Hetu46g00931 488 SMART carp 358 394 IPR006599 -
Hetu46g00931 488 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 3 486 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Hetu46g00931 488 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 320 487 IPR036223 -
Hetu46g00931 488 MobiDBLite consensus disorder prediction 224 266 - -
Hetu46g00931 488 MobiDBLite consensus disorder prediction 282 303 - -
Hetu46g00931 488 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 42 244 IPR036222 -
Hetu46g00931 488 Gene3D - 42 224 IPR036222 -
Hetu46g00931 488 MobiDBLite consensus disorder prediction 280 315 - -
Hetu46g00931 488 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Hetu46g00931 488 FunFam Adenylyl cyclase-associated protein 42 224 - -
Hetu46g00931 488 Pfam CAP, N-terminal domain 46 215 IPR053950 -
Hetu46g00931 488 FunFam Adenylyl cyclase-associated protein 319 487 - -
Hetu46g00931 488 Pfam Adenylate cyclase associated (CAP) C terminal 320 485 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu46g00931 K17261 adenylyl cyclase-associated protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
110631 Hetu28g02400 Hetu46g00931
110885 Hetu29g02411 Hetu46g00931
111222 Hetu30g02415 Hetu46g00931
113339 Hetu46g00931 Hetu46g02371
113340 Hetu46g00931 Hetu48g01942
405267 Hetu10g00115 Hetu46g00931
406276 Hetu11g00096 Hetu46g00931
407313 Hetu12g00091 Hetu46g00931
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr35:180989224 Hetu46g00931 Hetu-Chr46:46332087 dispersed
Hetu Hetu-Chr46:46332087 Hetu46g02371 Hetu-Chr46:141733978 dispersed
Hetu Hetu-Chr10:4159164 Hetu46g00931 Hetu-Chr46:46332087 wgd
Hetu Hetu-Chr11:3594687 Hetu46g00931 Hetu-Chr46:46332087 wgd
Hetu Hetu-Chr12:3700574 Hetu46g00931 Hetu-Chr46:46332087 wgd
Hetu Hetu-Chr28:162690218 Hetu46g00931 Hetu-Chr46:46332087 wgd
Hetu Hetu-Chr29:151285765 Hetu46g00931 Hetu-Chr46:46332087 wgd
Hetu Hetu-Chr30:153410800 Hetu46g00931 Hetu-Chr46:46332087 wgd