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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu46g00996 ATGGCAAAAAATTCAGTTGCTTTCTTTGCTTTTCTTCTGCTTCTCTTTGTTCTTGCTATCTCAGAAATCGGATCGGTGAAGGGAGAATTATGTGAGAAGGCCAGCAAGACATGGTCCGGAAATTGTGGCAACACAAGACACTGTGACGACCAGTGCAAGTCTTGGGAGGGTGCAGCCCATGGAGCTTGTCACGTGCGCGGTGGGAAACACATGTGCTTCTGCTACTTCAACTGTTCCAAAGCCCAGAAGTTGGCTCAGGATAAACTCAGAGCGGAAGAGCTCGCCAAAGAGAAGATTGAAGCAGAAAAGGCGACAGCCAAACCTTGA 327 48.32 MAKNSVAFFAFLLLLFVLAISEIGSVKGELCEKASKTWSGNCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCSKAQKLAQDKLRAEELAKEKIEAEKATAKP 108
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu46g00996 108 Gene3D - 30 78 IPR036574 -
Hetu46g00996 108 Pfam Gamma-thionin family 30 78 - -
Hetu46g00996 108 Coils Coil 82 104 - -
Hetu46g00996 108 SMART gth-4 30 78 IPR003614 GO:0006952(InterPro)
Hetu46g00996 108 SUPERFAMILY Scorpion toxin-like 29 78 IPR036574 -
Hetu46g00996 108 PANTHER DEFENSIN-LIKE PROTEIN 1 1 78 - GO:0006952(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu46g00996 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
313646 Hetu46g00996 Hetu48g00876
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr46:49811996 Hetu48g00876 Hetu-Chr48:46487915 dispersed
Hetu Hetu-Chr46:49412612 Hetu46g00996 Hetu-Chr46:49811996 proximal
Hetu Hetu-Chr46:49811996 Hetu47g00972 Hetu-Chr47:54568758 wgd
Hetu Hetu-Chr46:49811996 Hetu48g00873 Hetu-Chr48:46125651 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hetu4g00649 HSH 25 77 Plant Defensins gene family AT2G02130 60.377 5.16e-18 69.3
Hetu5g00604 HSH 4 73 Plant Defensins gene family AT5G63660 47.143 2.66e-18 70.5
Hetu6g00715 HSH 19 73 Plant Defensins gene family AT5G63660 58.182 6.19e-18 68.9
Hetu7g01982 HSH 2 78 Plant Defensins gene family AT1G19610 48.101 4.84e-24 84.7
Hetu7g01983 HSH 2 78 Plant Defensins gene family AT1G19610 48.101 4.84e-24 84.7
Hetu8g01812 HSH 2 78 Plant Defensins gene family AT1G19610 48.101 9.91e-24 85.5
Hetu9g01925 HSH 2 78 Plant Defensins gene family AT1G19610 48.101 4.84e-24 84.7
Hetu9g01926 HSH 2 78 Plant Defensins gene family AT1G19610 48.101 4.84e-24 84.7
Hetu10g00120 HSH,WGDA 24 78 Plant Defensins gene family AT1G19610 43.636 1.32e-14 66.6
Hetu11g00101 WGDA 24 78 Plant Defensins gene family AT1G19610 43.636 1.77e-09 51.6
Hetu12g00096 HSH,WGDA 7 78 Plant Defensins gene family AT1G19610 37.5 7.00e-13 61.2
Hetu22g01776 HSH,WGDA 1 77 Plant Defensins gene family AT2G02120 64.103 9.80e-32 103.0
Hetu23g01856 HSH,WGDA 1 77 Plant Defensins gene family AT2G02120 64.103 6.70e-32 105.0
Hetu24g01934 HSH,WGDA 1 77 Plant Defensins gene family AT2G02120 64.103 4.67e-32 105.0
Hetu44g02460 HSH 2 73 Plant Defensins gene family AT5G63660 61.644 2.61e-27 92.4
Hetu45g02715 HSH 2 73 Plant Defensins gene family AT5G63660 61.644 2.61e-27 92.4
Hetu46g00968 HSH 9 78 Plant Defensins gene family AT1G19610 37.5 2.34e-10 51.2
Hetu46g00977 . 13 78 Plant Defensins gene family AT1G19610 54.545 8.89e-25 92.0
Hetu46g00979 HSH 3 78 Plant Defensins gene family AT1G19610 47.368 5.20e-21 80.1
Hetu46g00980 HSH,WGDA 3 78 Plant Defensins gene family AT1G19610 46.053 2.91e-20 78.6
Hetu46g00986 . 4 78 Plant Defensins gene family AT1G19610 47.368 1.24e-18 74.7
Hetu46g00987 HSH 1 77 Plant Defensins gene family AT1G19610 38.462 2.95e-13 59.3
Hetu46g00996 HSH 1 78 Plant Defensins gene family AT1G19610 51.282 5.59e-26 90.9
Hetu46g03077 HSH,WGDA 1 77 Plant Defensins gene family AT2G02100 66.667 4.53e-34 109.0
Hetu47g00950 HSH 1 78 Plant Defensins gene family AT1G19610 35.294 4.36e-11 53.1
Hetu47g00952 HSH 13 78 Plant Defensins gene family AT1G19610 53.03 4.05e-23 84.0
Hetu47g00953 HSH 1 78 Plant Defensins gene family AT1G19610 46.154 1.39e-20 80.5
Hetu47g00954 HSH,WGDA 3 78 Plant Defensins gene family AT1G19610 46.053 2.85e-20 78.6
Hetu47g00972 HSH 1 78 Plant Defensins gene family AT1G19610 51.282 5.59e-26 90.9
Hetu47g03134 HSH,WGDA 1 77 Plant Defensins gene family AT2G02100 64.103 1.04e-32 106.0
Hetu48g00861 HSH 1 78 Plant Defensins gene family AT1G19610 35.294 4.91e-11 52.8
Hetu48g00863 HSH 13 78 Plant Defensins gene family AT1G19610 54.545 9.91e-24 85.5
Hetu48g00864 HSH 20 78 Plant Defensins gene family AT1G19610 52.542 2.55e-16 68.6
Hetu48g00865 HSH,WGDA 3 78 Plant Defensins gene family AT1G19610 46.053 2.91e-20 78.6
Hetu48g00873 HSH 1 77 Plant Defensins gene family AT1G19610 38.462 2.03e-13 59.7
Hetu48g00875 . 1 78 Plant Defensins gene family AT1G19610 51.282 2.84e-26 91.3
Hetu48g00876 HSH 1 78 Plant Defensins gene family AT1G19610 51.282 6.96e-26 90.5
Hetu48g02740 WGDA 1 77 Plant Defensins gene family AT2G02120 60.256 4.71e-29 97.1
Hetu48g02743 HSH,WGDA 1 77 Plant Defensins gene family AT2G02100 66.667 4.53e-34 109.0