AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu46g01033 ATGTCGGCATGTGGCGGTGATGGGTTTGGTTCCGGTGAAGCCACGTCATCCTCCGGCGATGATCATGATGCTTCTGATTTGGTTGCTTTGAAGATTTGTGTGTTGGGTGATGAACAAATTGGAAAAACAAGCTTCTTGGCAAAATATGTTGGTAAAGAAAAAAATAAGGAAGAATTTGAAGCTAAAAGAATAAATCATATGGATAAAACACTAAGGATTGGAGAAGCTAGAATTTCTTACAACATCTGGGAAGCTGGTGGAGACGCGTTATACCCCGACGGTGATTCAAAGAATATGATTCCTGCAGCTTGTAAGGACTCTGTAGCTATATTCTTCATGTTTGACTTAACAAGTCGTCGTACACTTTATAGTGTTATCAATTGGCATCAGCAAGCTAGGAACTACAACCAGACAGCAATGCTAGTGATGGTTGGAAGCAAGTTTGATGAATTTGTCCAGCTTCCCTTGGATTTACAATGGACTATCGCAAGCGAGGCGAGAGCATATGCGAAGGCCTTAAACGCGACATTGTTCTTCTCAAGTGCATCTTACAATATCAATGTTAATAAAATTTTCAAGTTTGTGACCGCAAAGCTATTTGACATTCCATGGACTCTCAAACGTAATCTTACAGTTGGTGAACCTATTATCGATTTCTAG 660 40.15 MSACGGDGFGSGEATSSSGDDHDASDLVALKICVLGDEQIGKTSFLAKYVGKEKNKEEFEAKRINHMDKTLRIGEARISYNIWEAGGDALYPDGDSKNMIPAACKDSVAIFFMFDLTSRRTLYSVINWHQQARNYNQTAMLVMVGSKFDEFVQLPLDLQWTIASEARAYAKALNATLFFSSASYNINVNKIFKFVTAKLFDIPWTLKRNLTVGEPIIDF 219
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu46g01033 219 MobiDBLite consensus disorder prediction 1 21 - -
Hetu46g01033 219 SMART rab-sub-5 30 202 - -
Hetu46g01033 219 ProSiteProfiles small GTPase Rab1 family profile. 23 219 - -
Hetu46g01033 219 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 211 IPR027417 -
Hetu46g01033 219 Gene3D - 19 209 IPR027417 -
Hetu46g01033 219 PANTHER - 28 218 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Hetu46g01033 219 PRINTS Transforming protein P21 ras signature 137 150 - -
Hetu46g01033 219 PRINTS Transforming protein P21 ras signature 30 51 - -
Hetu46g01033 219 PRINTS Transforming protein P21 ras signature 177 199 - -
Hetu46g01033 219 PRINTS Transforming protein P21 ras signature 71 93 - -
Hetu46g01033 219 Pfam Ras family 31 198 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu46g01033 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
313657 Hetu46g01033 Hetu48g00907
405279 Hetu10g00136 Hetu46g01033
406289 Hetu11g00121 Hetu46g01033
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr46:52076324 Hetu16g00349 Hetu-Chr16:13767268 dispersed
Hetu Hetu-Chr10:5169675 Hetu46g01033 Hetu-Chr46:52076324 wgd
Hetu Hetu-Chr11:4419626 Hetu46g01033 Hetu-Chr46:52076324 wgd
Hetu Hetu-Chr12:4420159 Hetu46g01033 Hetu-Chr46:52076324 wgd
Hetu Hetu-Chr46:52076324 Hetu47g01004 Hetu-Chr47:56795365 wgd
Hetu Hetu-Chr46:52076324 Hetu48g00907 Hetu-Chr48:48464109 wgd