Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu46g01033 | ATGTCGGCATGTGGCGGTGATGGGTTTGGTTCCGGTGAAGCCACGTCATCCTCCGGCGATGATCATGATGCTTCTGATTTGGTTGCTTTGAAGATTTGTGTGTTGGGTGATGAACAAATTGGAAAAACAAGCTTCTTGGCAAAATATGTTGGTAAAGAAAAAAATAAGGAAGAATTTGAAGCTAAAAGAATAAATCATATGGATAAAACACTAAGGATTGGAGAAGCTAGAATTTCTTACAACATCTGGGAAGCTGGTGGAGACGCGTTATACCCCGACGGTGATTCAAAGAATATGATTCCTGCAGCTTGTAAGGACTCTGTAGCTATATTCTTCATGTTTGACTTAACAAGTCGTCGTACACTTTATAGTGTTATCAATTGGCATCAGCAAGCTAGGAACTACAACCAGACAGCAATGCTAGTGATGGTTGGAAGCAAGTTTGATGAATTTGTCCAGCTTCCCTTGGATTTACAATGGACTATCGCAAGCGAGGCGAGAGCATATGCGAAGGCCTTAAACGCGACATTGTTCTTCTCAAGTGCATCTTACAATATCAATGTTAATAAAATTTTCAAGTTTGTGACCGCAAAGCTATTTGACATTCCATGGACTCTCAAACGTAATCTTACAGTTGGTGAACCTATTATCGATTTCTAG | 660 | 40.15 | MSACGGDGFGSGEATSSSGDDHDASDLVALKICVLGDEQIGKTSFLAKYVGKEKNKEEFEAKRINHMDKTLRIGEARISYNIWEAGGDALYPDGDSKNMIPAACKDSVAIFFMFDLTSRRTLYSVINWHQQARNYNQTAMLVMVGSKFDEFVQLPLDLQWTIASEARAYAKALNATLFFSSASYNINVNKIFKFVTAKLFDIPWTLKRNLTVGEPIIDF | 219 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu46g01033 | 219 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Hetu46g01033 | 219 | SMART | rab-sub-5 | 30 | 202 | - | - | |
| Hetu46g01033 | 219 | ProSiteProfiles | small GTPase Rab1 family profile. | 23 | 219 | - | - | |
| Hetu46g01033 | 219 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 30 | 211 | IPR027417 | - | |
| Hetu46g01033 | 219 | Gene3D | - | 19 | 209 | IPR027417 | - | |
| Hetu46g01033 | 219 | PANTHER | - | 28 | 218 | - | GO:0003924(PANTHER)|GO:0005525(PANTHER) | |
| Hetu46g01033 | 219 | PRINTS | Transforming protein P21 ras signature | 137 | 150 | - | - | |
| Hetu46g01033 | 219 | PRINTS | Transforming protein P21 ras signature | 30 | 51 | - | - | |
| Hetu46g01033 | 219 | PRINTS | Transforming protein P21 ras signature | 177 | 199 | - | - | |
| Hetu46g01033 | 219 | PRINTS | Transforming protein P21 ras signature | 71 | 93 | - | - | |
| Hetu46g01033 | 219 | Pfam | Ras family | 31 | 198 | IPR001806 | GO:0003924(InterPro)|GO:0005525(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu46g01033 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 313657 | Hetu46g01033 | Hetu48g00907 | |
| 405279 | Hetu10g00136 | Hetu46g01033 | |
| 406289 | Hetu11g00121 | Hetu46g01033 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr46:52076324 | Hetu16g00349 | Hetu-Chr16:13767268 | dispersed | |
| Hetu | Hetu-Chr10:5169675 | Hetu46g01033 | Hetu-Chr46:52076324 | wgd | |
| Hetu | Hetu-Chr11:4419626 | Hetu46g01033 | Hetu-Chr46:52076324 | wgd | |
| Hetu | Hetu-Chr12:4420159 | Hetu46g01033 | Hetu-Chr46:52076324 | wgd | |
| Hetu | Hetu-Chr46:52076324 | Hetu47g01004 | Hetu-Chr47:56795365 | wgd | |
| Hetu | Hetu-Chr46:52076324 | Hetu48g00907 | Hetu-Chr48:48464109 | wgd |