AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu47g01004 ATGACAACAATGGTTGATATGGCCACCGTGTGCCACCAGTCGAGAGAAATGTCGGCATGTGGCGGCGATGGGTTTGCTTCCGGTGAAGCCACGTCATCCTCCGGCGATGATCATGATGCTTCTGATTTGGTTGCTTTGAAGATTTGTGTGTTGGGTGATGAACAAATTGGAAAAACAAGCTTCTTGGCAAAGTATGTTGGTAAAGAAAAAAATAAGGAAGAATTTGAAGCTAAAAGAATAAATCATATGGATAAAACACTACGGATTGGAGAAGCTAGAATTTCTTACAACATCTGGGAAGCTGGTGGAGACGCGTTATACCCAGACGGTGATTCAAAGAATATGATTCCTGCAGCTTGTAAGGACTCTGTAGCTATATTCTTCATGTTTGACTTAACAAGTCGTCGTACACTTTATAGTGTTATCAATTGGCATCAGCAAGCTAGGAACTACAACCAGACAGCAATGCTAGTGATGGTTGGAAGCAAGTTTGATGAATTTGTCCAGCTTCCCTTGGATTTACAATGGACTATCGCAAGCGAGGCGAGAGCATATGCGAAGGCCTTAAACGCGACATTGTTCTTCTCAAGCGCATCTTACAATATCAATGTTAATAAAATTTTCAAGTTTGTGACCGCAAAGCTATTTGACATTCCATGGACTCTCAAACGTAATCTTACACTTGGTGAACCTATTATCGATTTCTAG 708 41.24 MTTMVDMATVCHQSREMSACGGDGFASGEATSSSGDDHDASDLVALKICVLGDEQIGKTSFLAKYVGKEKNKEEFEAKRINHMDKTLRIGEARISYNIWEAGGDALYPDGDSKNMIPAACKDSVAIFFMFDLTSRRTLYSVINWHQQARNYNQTAMLVMVGSKFDEFVQLPLDLQWTIASEARAYAKALNATLFFSSASYNINVNKIFKFVTAKLFDIPWTLKRNLTLGEPIIDF 235
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu47g01004 235 PANTHER - 44 234 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Hetu47g01004 235 ProSiteProfiles small GTPase Rab1 family profile. 39 235 - -
Hetu47g01004 235 Gene3D - 35 224 IPR027417 -
Hetu47g01004 235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 226 IPR027417 -
Hetu47g01004 235 PRINTS Transforming protein P21 ras signature 193 215 - -
Hetu47g01004 235 PRINTS Transforming protein P21 ras signature 46 67 - -
Hetu47g01004 235 PRINTS Transforming protein P21 ras signature 153 166 - -
Hetu47g01004 235 PRINTS Transforming protein P21 ras signature 87 109 - -
Hetu47g01004 235 Pfam Ras family 47 214 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Hetu47g01004 235 SMART rab-sub-5 46 218 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu47g01004 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
314880 Hetu47g01004 Hetu48g00907
405280 Hetu10g00136 Hetu47g01004
406290 Hetu11g00121 Hetu47g01004
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr47:56795365 Hetu16g00349 Hetu-Chr16:13767268 dispersed
Hetu Hetu-Chr10:5169675 Hetu47g01004 Hetu-Chr47:56795365 wgd
Hetu Hetu-Chr11:4419626 Hetu47g01004 Hetu-Chr47:56795365 wgd
Hetu Hetu-Chr12:4420159 Hetu47g01004 Hetu-Chr47:56795365 wgd
Hetu Hetu-Chr46:52076324 Hetu47g01004 Hetu-Chr47:56795365 wgd
Hetu Hetu-Chr47:56795365 Hetu48g00907 Hetu-Chr48:48464109 wgd