AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00762 ATGCGTTCATCCATGACAATTACAAGCCCTGGCTTCCCATCTTTACCCCAATTTCACCAACCAAACACCCACAAACCACCACTAATGATAACCCTTCAAAATCCCAGAAAAACCCATGAAGTATCCACAAAATGTTTAAAGAATTCTGGGTTTTTGTCTGCAATTGGGAACGCAATAGAAGAACAAGAGTATAGGAAAGCTAGGGCTGAAGTTGTTAGAAAAGGAACAGGGTTAGAGGGGTATAATATTGAGGGTCTTTCTATTGGTGGTAATGAGACTTGTATTATTGTTCCTGAGTTTAAGTGTGCTTTTGATATTGGAAGGTGTCCACCCAGAGCTGTTGGGATGAATTTCTTGTGTATTACTCATGCTCATCTTGATCACATTGGTGGACTACCGATGTATGTTGCAACTCGCGGTTTATACAACATGAGTCCTCCAACCGTATTTGTACCTCCGTCCATTAAAGAAGATGTCGAAAATTTGATTGAGCTTCACAGGAAGATGGGTGACGTGGAATTAAATCTTGATTTGGTTGCATTGGATGTAGGAGAAACATACGAGCTACGAAACGATCTTGTTGTACGCCCATTTAAAACTTATCACGTAATACCAAGTCAGGGTTATGTGATTTACTCGGTTCGCAAGAAATTGAAAAAGCAGTACATTCACTTAAAAGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGTGTTGAGATAACAGATACCATATTGTCCCCAGAGGTAGCATTCACTGGTGATACAAGTTCTGAGTTTCTACTTGATCCACGAAGCTCCGATGCATTGCGAGCCAAAGTTCTTATAACGGAGGCTACTTTTTTGGATGATCAATGCAACGTTGAGCACGCGCGTGAACATGGTCACATGCATATTGACGAGATTATCGAACATTCTAAGTGGATTAGGAACAAGGCGATTCTTTTGACTCATTTCTCGGCACGCTACCATATCGAGGAAATTCGTCAAGCGGTGACAAAGTTGCAGGCAAAGGTTCAAGGTCAAGCCAAAGTGGTCCCACTTACAGAAGGTTTTAGATCAATGTACACACCATAA 1074 41.15 MRSSMTITSPGFPSLPQFHQPNTHKPPLMITLQNPRKTHEVSTKCLKNSGFLSAIGNAIEEQEYRKARAEVVRKGTGLEGYNIEGLSIGGNETCIIVPEFKCAFDIGRCPPRAVGMNFLCITHAHLDHIGGLPMYVATRGLYNMSPPTVFVPPSIKEDVENLIELHRKMGDVELNLDLVALDVGETYELRNDLVVRPFKTYHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDTILSPEVAFTGDTSSEFLLDPRSSDALRAKVLITEATFLDDQCNVEHAREHGHMHIDEIIEHSKWIRNKAILLTHFSARYHIEEIRQAVTKLQAKVQGQAKVVPLTEGFRSMYTP 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00762 357 MobiDBLite consensus disorder prediction 1 26 - -
Hetu48g00762 357 Gene3D - 81 347 IPR036866 -
Hetu48g00762 357 PANTHER TRNASE Z TRZ1 37 351 - -
Hetu48g00762 357 Pfam Beta-lactamase superfamily domain 115 318 IPR001279 -
Hetu48g00762 357 SUPERFAMILY Metallo-hydrolase-oxidoreductase 89 331 IPR036866 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00762 K00784 ribonuclease Z [EC:3.1.26.11]
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Event-related genes

Select Gene_1 Gene_2 Event_name
313602 Hetu46g00834 Hetu48g00762
314824 Hetu47g00828 Hetu48g00762
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr14:24022583 Hetu48g00762 Hetu-Chr48:38682425 transposed
Hetu Hetu-Chr46:39939791 Hetu48g00762 Hetu-Chr48:38682425 wgd
Hetu Hetu-Chr47:45069658 Hetu48g00762 Hetu-Chr48:38682425 wgd