AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu48g00795 | ATGAATGATTCCATCACCGAGTCAAACTCGCCGTTATTACCGAGTCTCAACGAGGTGGAGACAATCATCGGATACAACTTCAAAAACAAAGAGTTACTAAAAGAAGCCTTTACTCACAACTCTTTTAAAGATAACGAATCTCAAGTATCTTACGAGCGGCTTGAGTACCTTGGAGACTCGGTTTTGAATCTCATGTTCGCCAAACAACATTACTTTTCGTACCCAAAAATGAACTCTGGTGAGTTGACTCGGTTGCGCGCAGCCAATGTGGACACCGAAGCCTTGGCTCGTGTTGCATTCAAACACGGGTTACATAGGTTTCTTAGACATGAAGATCCTTCACTAAATGAACGGGTACAAGAACTTATGGAAGGAATCAAAGAACACCCGTTGCACTCTCATGGTTTGATCAATTCTCCTAAAATACTCGCGGACATTGTTGAAGCCGTCGTTGGTGCGGTCTATGTTGATACCGGGTTATCGATCGACGAGACATGGGAGGTTGTGAAGAATTTGTTGCAACCTTTGACGACACCAGAAAACCTTAGTTTGAACCCAATGATGAAGTTAAATGAAACATGCCAAAAGATGGGGATAAAACTAGAATACAAAAACTTGTGGATTGAAACAGGAGATATAGAAATATACAAAGACAATGAGTTAATTGGCAAAGGGAACTACAAGAAAAAGAAAACGACAGCGAAAAACAAAGCAGCGGCCGATGCTTACGAGAATCTTGTCAAGTTGTTCGGTATTTGA | 759 | 41.37 | MNDSITESNSPLLPSLNEVETIIGYNFKNKELLKEAFTHNSFKDNESQVSYERLEYLGDSVLNLMFAKQHYFSYPKMNSGELTRLRAANVDTEALARVAFKHGLHRFLRHEDPSLNERVQELMEGIKEHPLHSHGLINSPKILADIVEAVVGAVYVDTGLSIDETWEVVKNLLQPLTTPENLSLNPMMKLNETCQKMGIKLEYKNLWIETGDIEIYKDNELIGKGNYKKKKTTAKNKAAADAYENLVKLFGI | 252 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu48g00795 | 252 | PANTHER | DICER-RELATED | 9 | 247 | - | GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER) | |
| Hetu48g00795 | 252 | Pfam | Double-stranded RNA binding motif | 186 | 246 | IPR014720 | - | |
| Hetu48g00795 | 252 | Pfam | Ribonuclease III domain | 52 | 159 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | Hamap | Ribonuclease 3 [rnc]. | 19 | 242 | IPR011907 | GO:0003723(InterPro)|GO:0004525(InterPro)|GO:0006364(InterPro) | |
| Hetu48g00795 | 252 | ProSiteProfiles | Ribonuclease III family domain profile. | 16 | 159 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | Gene3D | - | 181 | 250 | - | - | |
| Hetu48g00795 | 252 | ProSitePatterns | Ribonuclease III family signature. | 52 | 60 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | SUPERFAMILY | dsRNA-binding domain-like | 141 | 246 | - | - | |
| Hetu48g00795 | 252 | Gene3D | Ribonuclease III domain | 11 | 180 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | FunFam | Endoribonuclease dicer-like 1 | 11 | 180 | - | - | |
| Hetu48g00795 | 252 | CDD | RIBOc | 31 | 182 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | SMART | riboneu5 | 31 | 182 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Hetu48g00795 | 252 | SUPERFAMILY | RNase III domain-like | 15 | 178 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu48g00795 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr11:5974483 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr11:11742547 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr12:6424904 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr46:42415288 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr46:42497688 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr47:47451926 | Hetu48g00795 | Hetu-Chr48:41018301 | dispersed | |
| Hetu | Hetu-Chr48:41018301 | Hetu48g02022 | Hetu-Chr48:126106280 | dispersed | |
| Hetu | Hetu-Chr48:40953812 | Hetu48g00795 | Hetu-Chr48:41018301 | tandem |