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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00805 ATGATCTACCTCTTCTTCGGCGTTCTCTTCATCGAAATGGTAACAATTCTCTTGCTCTTATTCAAAACTCCACTCCGAAAGCTTCTGATTGTCGGATTAGATCGTGCCAAACGCGGCAGAGCACCGTTGGTTGTCAAATCCGTTGGTGCTACCGTCTTTGTCATCATGATGTACAACGTTTACAGCGTTACGGAGATCCAGAGCCGTCAGGCTGACGTCATCAACCCTACTGATCAGATTTTACTTGCTTATCACATGCTCGAAGCTTCTCTCATGGGATTCTCGCTTTTCCTATCACTAATGATAGACAGACTACATCATTACATAAGAGAACTTCGAATACTCAGAAAAACCATGGAAGCCGCAAAGAAACAGAACCGAGCGGCAGAAGAAACCAAGAACAAAGGTGCAGACGATGTCAAAGTCCTAAATGATGAATTATTTAAATTGAAGACACAAATTAAAAAACTCGAATCTGAACATGAATTAAAGGAAAAAGATATCAAATCCGCAGAAGCTAATTCACTCGCTCTCAAGAACCAATCAGAAGGGTTTCTTCTTGAATACGATCGTTTGTTAGCCGAAAACCAGAATCTTAGAGATCAATTGCGGGCAATTGATGAAAGTGCATCATATTCTAGTGGAAAGAAGAATATGTGA 660 40.76 MIYLFFGVLFIEMVTILLLLFKTPLRKLLIVGLDRAKRGRAPLVVKSVGATVFVIMMYNVYSVTEIQSRQADVINPTDQILLAYHMLEASLMGFSLFLSLMIDRLHHYIRELRILRKTMEAAKKQNRAAEETKNKGADDVKVLNDELFKLKTQIKKLESEHELKEKDIKSAEANSLALKNQSEGFLLEYDRLLAENQNLRDQLRAIDESASYSSGKKNM 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00805 219 Coils Coil 105 181 - -
Hetu48g00805 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Hetu48g00805 219 Gene3D - 136 199 - -
Hetu48g00805 219 Coils Coil 189 209 - -
Hetu48g00805 219 FunFam B-cell receptor-associated protein 29 136 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00805 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
313612 Hetu46g00895 Hetu48g00805
314834 Hetu47g00876 Hetu48g00805
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr48:41737337 Hetu9g01464 Hetu-Chr9:59325644 dispersed
Hetu Hetu-Chr47:49074055 Hetu48g00805 Hetu-Chr48:41737337 transposed
Hetu Hetu-Chr46:44569399 Hetu48g00805 Hetu-Chr48:41737337 wgd
Hetu Hetu-Chr47:49071681 Hetu48g00805 Hetu-Chr48:41737337 wgd