AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00815 ATGAAATACAATGACATCTCCCATTTTAGCCACCCTCAACACCGGCTCAAACCCGGCTACACCGAGGTCCCATTCAAGTGCGACGGTTGCAAGGAAGTCGGCATAGGGTCCAACTACAAATGCACAACATGCAACTATGATTTACATGTCCATTGTGCCCTGCCATCCCCTTCCATCACCCACCCTTTCTACACCAAGTGTTCATTCCAGTTCCTATCGCGCCCTCCTGGCCCCATAGCGCGATACTGCAACGCATGCGAGAAAGCAGTGTCAGGGTTTGTTTACCATTGTAAGTTGTGCGGGTTCGATCTTCACCCTTGTTGTGCCAAGCTTCCAACTATGTTGGATGATGGTGAGGTGGAGTTGTACTTGTATAGAAAAGTGGGGTCCGCCTGCCACAGGTGTGGCAGGAAAGGACGAAGTTGGAGTTACAGGTCAAAGTGCAAGAAGTACAACCTACATGTGGCATGTGTGAAAGAGATGTTGGTGGAGAGTTGGCATGAGATATATTTTGGTAGGGATGGGGTGAGTGGTGATTACCATGATTTGTGTGGGAAAAATGGGAAACTTGAGACAAGAATTCCAAGCTTGAAGGGTACATTGGAAAGCTATCACCATAATCATCATCATCAAAGCAAAGGGAAAGTGAAGAAGTGTTGTGAGATGGCTGGTTTGGCAATGCAGTTTGTGATTTCAGCTGTTCTTGGTGATCCGACCACTCTAATCGCAGGTGTCGTTGGTTCTTTGATGTCTAGATAG 759 47.3 MKYNDISHFSHPQHRLKPGYTEVPFKCDGCKEVGIGSNYKCTTCNYDLHVHCALPSPSITHPFYTKCSFQFLSRPPGPIARYCNACEKAVSGFVYHCKLCGFDLHPCCAKLPTMLDDGEVELYLYRKVGSACHRCGRKGRSWSYRSKCKKYNLHVACVKEMLVESWHEIYFGRDGVSGDYHDLCGKNGKLETRIPSLKGTLESYHHNHHHQSKGKVKKCCEMAGLAMQFVISAVLGDPTTLIAGVVGSLMSR 252
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00815 252 ProSiteProfiles Zinc finger phorbol-ester-DAG-type profile. 13 67 IPR002219 -
Hetu48g00815 252 Gene3D - 12 58 - -
Hetu48g00815 252 PANTHER CYSTEINE-HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 2 250 - -
Hetu48g00815 252 SUPERFAMILY Cysteine-rich domain 30 114 IPR046349 -
Hetu48g00815 252 Pfam C1 domain 74 109 IPR004146 -
Hetu48g00815 252 Pfam C1 domain 9 53 IPR004146 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00815 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
110624 Hetu28g02380 Hetu48g00815
110879 Hetu29g02387 Hetu48g00815
111234 Hetu30g02449 Hetu48g00815
313618 Hetu46g00903 Hetu48g00815
314839 Hetu47g00899 Hetu48g00815
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr46:45323173 Hetu48g00815 Hetu-Chr48:42454673 wgd
Hetu Hetu-Chr47:49908030 Hetu48g00815 Hetu-Chr48:42454673 wgd