Gene detail

AGRP Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Hetu48g00849	ATGGTGGACGCTCCACTTACAGGGGCTCATCATCGAAATCGTGTAAGCGAAATGGCCGCCATTTTAGCTCGCAAATCGATCTCTGCTATTCGCAATCGACAACTTGTTTTGGCAGGACAAGTGTTGCAGGGTTCTAACAATGGGACAGTTTCTGGCGCACGCTCGTTTGCGACCAAACACTCGTTCTCAACTGATAAAGATGATGAGGAAAGAGAACAGCTTGCTAAGGAGATCTCAAAAGACTGGAGTTCTGTCTTTGAGCGGAGCATCAATACATTATTTCTTACTGAATTGGTTCGAGGTCTGTCTCTGACACTCAAATACTTCTTTGAGCCAAAAGTTACAATTAATTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGATTTCGAGGTGAACATGCTCTCAGACGTTATCCAACTGGAGAAGAACGTTGTATTGCCTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCTATCACTATAGAGGCAGAGGAACGAGAAGATGGCAGCCGTAGAACAACAAGGTATGACATTGATATGACAAAGTGCATATACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCGATTGTTGAAGGCCCCAACTTTGAGTTTGCTACCGAAACCCACGAGGAACTTCTGTATGATAAGGAGAAGCTTCTTGAGAACGGTGATCGATGGGAAACCGAGATTGCTGAGAATCTTAGATCCGAGAGCCTTTATCGATAA	735	44.63	MVDAPLTGAHHRNRVSEMAAILARKSISAIRNRQLVLAGQVLQGSNNGTVSGARSFATKHSFSTDKDDEEREQLAKEISKDWSSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR	244

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Hetu48g00849	244	FunFam	NADH-quinone oxidoreductase subunit I 1	118	241	-	-
	Hetu48g00849	244	Gene3D	-	118	243	-	-
	Hetu48g00849	244	PANTHER	NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL	77	244	IPR010226	GO:0003954(PANTHER)\|GO:0005747(PANTHER)\|GO:0006120(PANTHER)\|GO:0009060(PANTHER)\|GO:0016020(InterPro)\|GO:0016651(InterPro)\|GO:0032981(PANTHER)\|GO:0045272(PANTHER)\|GO:0051539(InterPro)
	Hetu48g00849	244	Hamap	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI].	92	228	IPR010226	GO:0016020(InterPro)\|GO:0016651(InterPro)\|GO:0051539(InterPro)
	Hetu48g00849	244	Pfam	4Fe-4S dicluster domain	144	198	IPR017896	-
	Hetu48g00849	244	ProSiteProfiles	4Fe-4S ferredoxin-type iron-sulfur binding domain profile.	136	165	IPR017896	-
	Hetu48g00849	244	ProSitePatterns	4Fe-4S ferredoxin-type iron-sulfur binding region signature.	145	156	IPR017900	-
	Hetu48g00849	244	ProSitePatterns	4Fe-4S ferredoxin-type iron-sulfur binding region signature.	184	195	IPR017900	-
	Hetu48g00849	244	ProSiteProfiles	4Fe-4S ferredoxin-type iron-sulfur binding domain profile.	175	204	IPR017896	-
	Hetu48g00849	244	NCBIfam	NADH-quinone oxidoreductase, chain I	101	222	IPR010226	GO:0016020(InterPro)\|GO:0016651(InterPro)\|GO:0051539(InterPro)
	Hetu48g00849	244	SUPERFAMILY	4Fe-4S ferredoxins	118	228	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Hetu48g00849	K03941	NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
	Hetu48g00849	K00338	NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	113616	Hetu48g00849	Hetu7g02007
	113617	Hetu48g00849	Hetu8g01828
	113618	Hetu48g00849	Hetu9g01949
	313634	Hetu46g00943	Hetu48g00849
	314857	Hetu47g00934	Hetu48g00849

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Hetu	Hetu-Chr46:46654660	Hetu48g00849	Hetu-Chr48:43940435	wgd
	Hetu	Hetu-Chr47:51452851	Hetu48g00849	Hetu-Chr48:43940435	wgd
	Hetu	Hetu-Chr48:43940435	Hetu7g02007	Hetu-Chr7:85260640	wgd
	Hetu	Hetu-Chr48:43940435	Hetu8g01828	Hetu-Chr8:83931593	wgd
	Hetu	Hetu-Chr48:43940435	Hetu9g01949	Hetu-Chr9:82663775	wgd