AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00850 ATGATACGAGCGGTTATTGTAATTAACGATCAAGGCAAGCCTCGCCTTGTCAAATTCTACGACTATCAGCCGGTGGAGAAACAACAGGAAATTATTCGGAACATATACGGAGGTCTGTTTCAGTTTCCGTTACGATTATTTGCTTATAATCGTTTCATTCTATGCAGTCGAGCTGAGAATGTGAGCAACTTTGTTCAGGATTCAACTTTTGGACCGGATACCCGACTTGTATACAAGACCTTTGCTACACTATACTTCATTGTCATATTTGATGAGTCTGAAAATGAACTTGCTATACTAGATCTTATGCAAGTATTTGTGGAGACGTTGGACAAGTGTTTCAGTAATGTGTGTGAGCTCGATATTGTTTTCAATTTCAACAAGGTACATACCATACTTGATGAGATTATTTTGGGTGGTCAAGTTGTGGAAATGAGTTCTTCTGAGGTTGTCAAATCAACCGACGACATTTCTTGGCTGGAGAAGAACCCGAATTCTATCACGAGAGTTTCAAAATCCATATCCGGTTGGCAGGGACGATAA 543 39.78 MIRAVIVINDQGKPRLVKFYDYQPVEKQQEIIRNIYGGLFQFPLRLFAYNRFILCSRAENVSNFVQDSTFGPDTRLVYKTFATLYFIVIFDESENELAILDLMQVFVETLDKCFSNVCELDIVFNFNKVHTILDEIILGGQVVEMSSSEVVKSTDDISWLEKNPNSITRVSKSISGWQGR 180
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00850 180 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 158 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Hetu48g00850 180 PIRSF AP-complex-sigma 1 171 IPR016635 GO:0015031(InterPro)
Hetu48g00850 180 Gene3D - 1 172 - -
Hetu48g00850 180 Pfam Clathrin adaptor complex small chain 1 155 IPR022775 -
Hetu48g00850 180 ProSitePatterns Clathrin adaptor complexes small chain signature. 76 86 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Hetu48g00850 180 SUPERFAMILY SNARE-like 1 153 IPR011012 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00850 K12399 AP-3 complex subunit sigma
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
313635 Hetu46g00944 Hetu48g00850
314858 Hetu47g00935 Hetu48g00850
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr48:43956685 Hetu9g01505 Hetu-Chr9:61411891 dispersed
Hetu Hetu-Chr46:46661122 Hetu48g00850 Hetu-Chr48:43956685 wgd
Hetu Hetu-Chr47:51459353 Hetu48g00850 Hetu-Chr48:43956685 wgd