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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00882 ATGGCAGATCAAGTGTTGGAGGGTAGCCAACCAGTTGATCTCCAAAAGCACCCATCTGGAATCATTCCTACTCTTCAGAATATTGTGTCTACTGTGAATCTTGATTGCAAGCTAGATCTTAAGGCTATTGCCCTACAAGCTCGTAATGCAGAATATAACCCAAAGCGTTTTGCTGCCGTAATCATGAGGATAAGAGAACCAAAAACAACGGCTTTAATCTTTGCCTCTGGGAAAATGGTATGTACAGGAGCCAAGAGTGAACAGCAATCCAAACTGGCAGCACGCAAGTATGCCAGAATTATTCAGAAACTTGGATTCCCAGCTAGATTTAAGGATTTCAAGATTCAGAATATCGTTGGATCGTGTGATGTAAAATTTCCCATTCGACTTGAAGGCCTTGCGTATTCTCATGGTGCTTTTTCAAGTTATGAACCAGAACTATTTCCGGGACTTATATATCGAATGAAACAACCAAAAATCGTTCTCCTAATATTTGTTTCCGGGAAGATCGTTCTTACAGGAGCCAAGGTCCGAGATGAGACGTATACCGCCTTTGAGAACATATATCCCGTCCTTACTGAATTCAGAAAGAATCAACAGTGGTATGTCTCCAATCATGCGGGTCGGGTCGGTTGGGTAATGGGTGGATCATATCGCTGTTGGGTTGGGTTGGATTCTTTAAGATGGATGAATTTGGTGTTTCATGGTGGTGAAAGTTGA 720 42.22 MADQVLEGSQPVDLQKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPARFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVLTGAKVRDETYTAFENIYPVLTEFRKNQQWYVSNHAGRVGWVMGGSYRCWVGLDSLRWMNLVFHGGES 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00882 239 PANTHER TATA-BOX BINDING PROTEIN 9 200 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)|GO:0006352(PANTHER)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
Hetu48g00882 239 FunFam TATA-box-binding protein 2 30 113 - -
Hetu48g00882 239 Gene3D - 30 115 IPR012295 -
Hetu48g00882 239 SUPERFAMILY TATA-box binding protein-like 112 199 - -
Hetu48g00882 239 ProSitePatterns Transcription factor TFIID repeat signature. 143 192 IPR030491 -
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 158 174 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 PRINTS Transcription initiation factor TFIID signature 139 154 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 CDD TBP-eukaryotes 22 195 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 Hamap TATA-box-binding protein [tbp]. 19 198 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 195 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Hetu48g00882 239 FunFam TATA-box-binding protein 2 114 195 - -
Hetu48g00882 239 Gene3D - 26 195 IPR012295 -
Hetu48g00882 239 SUPERFAMILY TATA-box binding protein-like 22 114 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00882 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
110649 Hetu28g02415 Hetu48g00882
110900 Hetu29g02437 Hetu48g00882
111208 Hetu30g02394 Hetu48g00882
113627 Hetu48g00882 Hetu7g01973
113628 Hetu48g00882 Hetu9g01916
313650 Hetu46g01006 Hetu48g00882
314873 Hetu47g00982 Hetu48g00882
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr28:164288790 Hetu48g00882 Hetu-Chr48:47265028 wgd
Hetu Hetu-Chr29:152547310 Hetu48g00882 Hetu-Chr48:47265028 wgd
Hetu Hetu-Chr30:151941040 Hetu48g00882 Hetu-Chr48:47265028 wgd
Hetu Hetu-Chr46:51039829 Hetu48g00882 Hetu-Chr48:47265028 wgd
Hetu Hetu-Chr47:55608285 Hetu48g00882 Hetu-Chr48:47265028 wgd
Hetu Hetu-Chr48:47265028 Hetu7g01973 Hetu-Chr7:83237163 wgd
Hetu Hetu-Chr48:47265028 Hetu9g01916 Hetu-Chr9:80275211 wgd