AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu48g00978 ATGTTGAGCAGCAGCAGCAGCAGCAGCAGCGGCTCTGGGGGAACCGTTTACTGGTTCCGAAACGAACAACCCACTTCGAATTTCAAAGGAATTGTTGTGATTTTCACTTGGGGTTCTGTTCAATTGAAGGATTATGTCAATCTTTATTCGTCTTGTGGCTGGGATTCTCTCGTTGTTGTTTCCGATTTTCTCAATCCATTTTTTCCAGAGAGAGCCACATCGCTTGCATTTTCCGTTCTCAATGAGCTTTTAGAGGAATTGAGGGCTAGACCATGTCCGTTAGTTTTTGCAGCCTTTTCGGGTGGTTCACAAGCCTGTATGTATAAGGTTCTTCAGATCATTGAAAGGACATGTGAAGCACATCTTAATCTGGATGATAGTCGTTTGATCATGACCTGCATCTCTGGTCAAATGTATGACTCGGGTCCGGTCAATGTAACAAGTGATTTGGGTGCGCGGTTTGCTCTACAATCTTCAATTCTCAACGTACCCGGTTCGTCAAAGTTGGCATCAATGGTTGCAAAAGGTGTTACTTCTGGTCTTGATGCTCTTTTCCTTACAAGATTTGGATCCCACCGCTCTGAATATTGGCAAACGTTGTACTCGTCTGTTGGTTTGGGTGCCCCATTTCTCATATTGTGTTCGGAAAACGACGACCTTGCCCCATATCCAGTTATTTGCTCATTTGCTCAACAAGTACAGGGATTAGGAGGACATGTTCGACTAATTGGATGGAAGGACTCTCCTCACGTAGGTCACTACAAGCACAACCCCATCCAATACAGAGCAGCGGTAACCGAATTTCTCGACCACTCAGTTTCAATATTCAACCAAAAACTTCAAAAACTCGGTGAAAGAAACGGCATGGAGGGCATGCACGATAAGATATGTGAATTAATTTGCGACCTCCAAAAAGCCGCAGTTGATTCAAACCAAAGCCTTAGAAGAGTAGCGACGGGGCCAAACGATCACTTCTTCTTACCAAGTTCAGCCGAGTATCAAACCACTAAAGAATCTGGTTCATTACAAGATGAACAAAGAACAACAGTCCATTTATCAAGCCCACCGGGCCTGAACCCACACAGTGTTCTTGGTCAAGTGCTGTTTGATGTGTGTGTTCCTAAAAACATCGAAGGTTGGGATATTAAGTTTGAAAATAGAAAGGCGTTTGCAACCGCAGGTAAACAGTCATCATATTTAAAACGCATGAGACGATCAAGATTATGA 1227 43.68 MLSSSSSSSSGSGGTVYWFRNEQPTSNFKGIVVIFTWGSVQLKDYVNLYSSCGWDSLVVVSDFLNPFFPERATSLAFSVLNELLEELRARPCPLVFAAFSGGSQACMYKVLQIIERTCEAHLNLDDSRLIMTCISGQMYDSGPVNVTSDLGARFALQSSILNVPGSSKLASMVAKGVTSGLDALFLTRFGSHRSEYWQTLYSSVGLGAPFLILCSENDDLAPYPVICSFAQQVQGLGGHVRLIGWKDSPHVGHYKHNPIQYRAAVTEFLDHSVSIFNQKLQKLGERNGMEGMHDKICELICDLQKAAVDSNQSLRRVATGPNDHFFLPSSAEYQTTKESGSLQDEQRTTVHLSSPPGLNPHSVLGQVLFDVCVPKNIEGWDIKFENRKAFATAGKQSSYLKRMRRSRL 408
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu48g00978 408 PANTHER UNCHARACTERIZED 6 277 IPR008547 -
Hetu48g00978 408 MobiDBLite consensus disorder prediction 337 356 - -
Hetu48g00978 408 SUPERFAMILY alpha-beta-Hydrolases 73 269 IPR029058 -
Hetu48g00978 408 Gene3D alpha-beta hydrolase 146 283 IPR029058 -
Hetu48g00978 408 Pfam Eukaryotic protein of unknown function (DUF829) 134 380 IPR008547 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu48g00978 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
313665 Hetu46g01099 Hetu48g00978
314409 Hetu46g01099 Hetu48g00978
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr48:53201657 Hetu6g02364 Hetu-Chr6:157057128 dispersed
Hetu Hetu-Chr11:2510186 Hetu48g00978 Hetu-Chr48:53201657 wgd
Hetu Hetu-Chr12:2795276 Hetu48g00978 Hetu-Chr48:53201657 wgd
Hetu Hetu-Chr46:56101335 Hetu48g00978 Hetu-Chr48:53201657 wgd
Hetu Hetu-Chr47:60502899 Hetu48g00978 Hetu-Chr48:53201657 wgd