AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu50g03508 ATGTGCGGAATCGCCCTAATCATCTCCGGTTTTCGTGTCGATTCATCGCATACTCTTCCAGATGCAACCGATTATTGTTATTCACCTCATTCTCAACAATCGGAAACTACATTGTTTTCTGTAGATGATTTCAAAGCAGCTCTGAGGAAAAGAGGCCCTGATAGTTTAGGAAGCAAGTCTATATCACTTCATGTTCACGATGGAAGGATTATTCGATCTTCAGTGGAGGAAGAAGAACCAACTATATTATCCAACTCAAACGTTGATATTGATTTGAATGATGGTTTAGTTGGAAATTTTTTATTTGTTGGTGCTACATTGCAATTAAGAGGAGTACATCCAATCACACAACCTTTGGTGGACAAATCTGGGAGTATTCTTGTCTATAATGGTGAAGTGTTTGGAGGAATTGAGATCAGTAACGATAGCAATGATGCTGAAGTTCTCATTGAGTCCTTAAGTAAATGCTGCAACTGCCTTTCTCGTCAACATGACGCTGCATGTTCTTCTGGGAAGTACTCTGTTCCTGAATTTCTTTCGAAAATCAAGGGGCCTTGGGCTTTAATCTACTGGCAGGAGAGCTCAAAGACAATATGGTTTGGTAGAGATGCACTTGGAAGGCGAAGTCTTCTAATTCATCGGCCAAATATAAAAGACTCCCGACTCATGCTTTCTTCTGTATCGCCACCTTACGCTCTTCATGCCGTTACAGATTTTGGATCTGAAAATGGACCTGGTGAACCAAGCTTTTGGGAAGAGCTTCCATGTGGAGTTTACAGCTTGTCCATGAATGCTTCAAAACTGGATGGAAATTGGGCGTGTGAAGTTAAAAGACATGATTGGCTTGATCCGTTGCTGCAAGAACTGATTAAGTGGGATAGATCTCTCGTGGAACCCACACCTGATGTTTTAAGTGATGTTCATAAAACGTGTTCTAATGAGCAAGAGCAATGGGCGAAATTGCATCAGGAAGTTCTCTCTGCGCTTAAAGAATCTGTGAGACGACGCACAATATTTTCAGGAGTCCACCAGGGCAATTCTCCAGTGGCTGTACTTTTTTCTGGTGGCTTAGATTCGATGATTCTTGCAGCATTGCTGGATCAGTGCTTAGATCCAAAATATGAAATTGATTTGTTGAATGTGAGTTTTGATGGTCAGTTAGCTCCTGACAGAATCTCTGCTAGGGCAGGTGTGAACGAGCTTAGAAAAATTGCCCCCTTGAGAAGATGGAATCTGGTAGAGATCGATGCAGAATTGTCAAAATTGACTCTGGAGACGCCACATGTCATGTCGCTTATCAATCCCTCGAATACATACATGGACCTTAATATTGGAATCGCCTTGTGGTTGGCAGCTGGCGGTGATGGGTGGGTGAGTGAAGAAATTGGGACGGATAGTAATAACCATTCAGAATGCCAGCGTATTAAGTACAAGTCTGAATCCAGAATTTTGTTGGTCGGTTCTGGTGCAGATGAGCAATGTGCTGGTTACGGCCGCCATAAAACTAAGTACAAAAAAAGCAGTTGGGCTGGGCTAAATGAAGAAATGAAATTAGATATGCAGAGAATATGGAAGAGGAACCTAGGTAGAGATGATAGATGCATTGCTGATAACGGCAAAGAGGCAAGATTTCCTTTTCTAGATGAGGATGTAATAAGGCTACTGCTCGATATTCCACTATGGGAAATTGCAGACCTTCGCCAACCAAGTGGAGTTGGCGATAAAAAAATATTGCGTGAGGTTGCAAGAATGCTTCACTTGCAAGAAGCAGCTGTTCTACCTAAAAGAGCTATACAGTTCGGTTCTAGAATCGCTAGGGAATCAAACCGCAAGAATTTTGGAAGTAATCGGGCTGCAAATCAAGCTTCTGCTGGAAGTGCACTCTTTCACCCGCTCTAA 1899 42.34 MCGIALIISGFRVDSSHTLPDATDYCYSPHSQQSETTLFSVDDFKAALRKRGPDSLGSKSISLHVHDGRIIRSSVEEEEPTILSNSNVDIDLNDGLVGNFLFVGATLQLRGVHPITQPLVDKSGSILVYNGEVFGGIEISNDSNDAEVLIESLSKCCNCLSRQHDAACSSGKYSVPEFLSKIKGPWALIYWQESSKTIWFGRDALGRRSLLIHRPNIKDSRLMLSSVSPPYALHAVTDFGSENGPGEPSFWEELPCGVYSLSMNASKLDGNWACEVKRHDWLDPLLQELIKWDRSLVEPTPDVLSDVHKTCSNEQEQWAKLHQEVLSALKESVRRRTIFSGVHQGNSPVAVLFSGGLDSMILAALLDQCLDPKYEIDLLNVSFDGQLAPDRISARAGVNELRKIAPLRRWNLVEIDAELSKLTLETPHVMSLINPSNTYMDLNIGIALWLAAGGDGWVSEEIGTDSNNHSECQRIKYKSESRILLVGSGADEQCAGYGRHKTKYKKSSWAGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRLLLDIPLWEIADLRQPSGVGDKKILREVARMLHLQEAAVLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSALFHPL 632
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu50g03508 632 PANTHER ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1 1 629 IPR051857 -
Hetu50g03508 632 CDD Asn-Synthase-B-C 327 601 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Hetu50g03508 632 Pfam Asparagine synthase 506 585 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Hetu50g03508 632 Pfam Asparagine synthase 325 396 IPR001962 GO:0004066(InterPro)|GO:0006529(InterPro)
Hetu50g03508 632 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 44 250 IPR029055 -
Hetu50g03508 632 Pfam Glutamine amidotransferase domain 116 226 IPR017932 -
Hetu50g03508 632 Gene3D HUPs 308 627 IPR014729 -
Hetu50g03508 632 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 2 254 IPR017932 -
Hetu50g03508 632 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 319 625 - -
Hetu50g03508 632 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 27 250 IPR029055 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu50g03508 K01953 asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]
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Event-related genes

Select Gene_1 Gene_2 Event_name
317356 Hetu49g03821 Hetu50g03508
318004 Hetu50g03508 Hetu51g03882
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr11:214441626 Hetu50g03508 Hetu-Chr50:205775090 dispersed
Hetu Hetu-Chr25:162369877 Hetu50g03508 Hetu-Chr50:205775090 dispersed
Hetu Hetu-Chr27:172955074 Hetu50g03508 Hetu-Chr50:205775090 dispersed
Hetu Hetu-Chr47:109472021 Hetu50g03508 Hetu-Chr50:205775090 dispersed
Hetu Hetu-Chr50:205775090 Hetu51g03882 Hetu-Chr51:227108248 dispersed
Hetu Hetu-Chr49:220938911 Hetu50g03508 Hetu-Chr50:205775090 wgd
Hetu Hetu-Chr50:205775090 Hetu51g03881 Hetu-Chr51:227091504 wgd