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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu51g03998 ATGAACATCGCGAGTGTTCATGTTCCTACACTTCACCCCCTTTTCTCCAAAATCCGTTACTCGCAACTCAGGGTTTATTGGAAAATGGCTGAACAACTTAAGCAGCAACCAGCTTTCGTTAAGATCAACCAACTTCGTCCTGGTGCTTTTGGCCTTAACCTAACTGTAAAAGTGGTTAGCTCAAAAGCAATAATGACACGAGGTCGCAATGGAACTCAAGGTCGAAACATGCGTCTTGCTGAATGTTTGGTTGGTGATGAAACTGGAATTGTTGTTTTCACTGCTAGAAATGATCAAGTGGAAGCCATGAAGGAGGGCAGTACTGTAATTTTGCGCAATGCAAAAATCGACATGTACAAAGGGTCGATGAGACTGGCAGTAGACAAATGGGGTCGTGTTGAAGTAACAGAACCAGCTGATTTTTCTGTTAAGGAAGACAACAATCTGTCACTCATCGAGTTTGAACTTATTACAGTTGAAGAGTGA 486 42.39 MNIASVHVPTLHPLFSKIRYSQLRVYWKMAEQLKQQPAFVKINQLRPGAFGLNLTVKVVSSKAIMTRGRNGTQGRNMRLAECLVGDETGIVVFTARNDQVEAMKEGSTVILRNAKIDMYKGSMRLAVDKWGRVEVTEPADFSVKEDNNLSLIEFELITVEE 161
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu51g03998 161 Gene3D - 50 151 IPR012340 -
Hetu51g03998 161 Pfam Single-stranded DNA binding protein Ssb-like, OB fold 45 135 IPR048970 -
Hetu51g03998 161 CDD SoSSB-OBF 53 135 - -
Hetu51g03998 161 PANTHER OS05G0244600 PROTEIN 30 160 - -
Hetu51g03998 161 SUPERFAMILY Nucleic acid-binding proteins 29 158 IPR012340 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu51g03998 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
318043 Hetu50g03632 Hetu51g03998
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr51:72316691 Hetu51g03998 Hetu-Chr51:231726691 dispersed
Hetu Hetu-Chr51:170101277 Hetu51g03998 Hetu-Chr51:231726691 dispersed
Hetu Hetu-Chr49:882814 Hetu51g03998 Hetu-Chr51:231726691 wgd
Hetu Hetu-Chr50:210660299 Hetu51g03998 Hetu-Chr51:231726691 wgd
Hetu Hetu-Chr50:213620 Hetu51g03998 Hetu-Chr51:231726691 wgd
Hetu Hetu-Chr51:2747024 Hetu51g03998 Hetu-Chr51:231726691 wgd